Detail information of AT2G04700_circ_g.3


General Information
CircRNA Name AT2G04700_circ_g.3
ID in PlantcircBase ath_circ_012809
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1647553-1648152  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G04700
Parent gene annotation Ferredoxin-thioredoxin reductase, catalytic chain
Parent gene strand +
Alternative splicing AT2G04700_circ_g.1 AT2G04700_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04700.2:2
AT2G04700.3:2
AT2G04700.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACATCTTGTACTAAAGTATTTATCACTTGTTCATCAGGAAGGAGTGCCATTGTATGCTTTTC
TTAACTCCTGATAATGATTTCGCTGGAAAAGATCAGacactatgatgataaagctgctgaggtt
ggacaaggcttttggaattgtccgtgtgttccaatgagagagaggtaagaactatcttcttcat
gtggttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACACTATGATGATAAAGCTGCTGAGGTTGGACAAGGCTTTTGGAATTGTCCGTGTGTTCCAATG
AGAGAGAGGTAAGAACTATCTTCTTCATGTGGTTGCATAATAAGCATTGGGGTTGCTATATAGT
TAGAACTAAGAATATAAAGTCCTTTGGGAAAAGCTGGTTATATAGATCGTCTCCAACGTCCTTG
TTGTTATTAGTTGGATAGTATTCAGCAGCATACGTATGTTGTAGTTTCCATAGAGGTAGCCGAT
GCTCCGTATTGGTTGTATCAAGATTGATGCAGAGAATGTATTCACATATTGCTAGGCAAGTGGA
AATTGAATTAACCATAGTTAGAAAACTCCTGTAAAACTCTTGGCCTATGTGGCTCTTTTGATCA
AATTCTGATACACCGCAAATTTAAGATCCTTTGTGTTTTAATAGGACTTAGTTTAGGTAGTAGA
GTTCGATCAATTTTGCATCTGTTGACGGTTTATTCTGATAATACTTGCTTGTTTACATCTTGTA
CTAAAGTATTTATCACTTGTTCATCAGGAAGGAGTGCCATTGTATGCTTTTCTTAACTCCTGAT
AATGATTTCGCTGGAAAAGATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.121811055
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017