Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G03430_circ_g.2 |
ID in PlantcircBase | ath_circ_012675 |
Alias | At_ciR5033 |
Organism | Arabidpsis thaliana |
Position | chr2: 1036395-1037119 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene | AT2G03430 |
Parent gene annotation |
Ankyrin repeat family protein |
Parent gene strand | - |
Alternative splicing | AT2G03430_circ_g.1 |
Support reads | 2/1 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G03430.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.163443138 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1036443-1036397(-) |
Potential amino acid sequence |
MGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADV NAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGA EIDATDKMGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVL LTRGADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCE FLIEEGAEIDATDKMGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGN AELVEVLLTRGADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASV GKLEVCEFLIEEGAEIDATDKMGQTALMHSVICDDKQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |