Detail information of AT2G03430_circ_g.2


General Information
CircRNA Name AT2G03430_circ_g.2
ID in PlantcircBase ath_circ_012675
Alias At_ciR5033
Organism Arabidpsis thaliana
Position chr2: 1036395-1037119  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene AT2G03430
Parent gene annotation Ankyrin repeat family protein
Parent gene strand -
Alternative splicing AT2G03430_circ_g.1
Support reads 2/1
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03430.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCGATGCTAGCAGCGGAATGCAAAGGAGCCCATCCTTCATCATCCTTGCTATTGATTACAGT
CTTTGCTTCATCTGAACTTGATAACAACTTCACTATctgtttgtcatcgcagataactgaatgc
atgagtgcagtttgacccattttatccgtagcatcgatctctgctccttcttcaataagaaatt
cacaaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTTGTCATCGCAGATAACTGAATGCATGAGTGCAGTTTGACCCATTTTATCCGTAGCATCG
ATCTCTGCTCCTTCTTCAATAAGAAATTCACAAACTTCTAACTTTCCCACGCTTGCTGCCCTGT
GAAGCGGAGTGCAACCAACCTAAAAGCCACACAAAAAAAAGTTTGTTTGTGTGTTGATGATCAC
AAGCAACAAGACATTAAGAAGCTACAAAACCTTGTCTGTGATGTTAATCTTTGCACCGTGTGTT
AATAAAAGCTGAGCAATCTCCAACCGGCCTTTGCTAGCAGCATAGTGAAGAGCAGTGCGACCAC
CGTTATTTTTGGCATTGACATCAGCACCTAAACACAAAGAAAATGTCATCAAATGTATCCATCT
TCTCATACATGCAATGAATTGAAGTTAGAGCTAAACACTGGAAGAACTACTTCACAGTAGGAAC
TTATATGTCCAATTCCAATGGAGGACTATTAGATATTAAGAGATCAACTACTCAGGACTGATAA
AGATTACAGCTTTATGATAGCAAAACAAGATTTTACCACCGTTTCAACAACAATAAGGCACATA
AGATTATGTAACATACCTCTGGTCAAAAGCACCTCAACGAGCTCAGCATTACCGATGCTAGCAG
CGGAATGCAAAGGAGCCCATCCTTCATCATCCTTGCTATTGATTACAGTCTTTGCTTCATCTGA
ACTTGATAACAACTTCACTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.163443138
Functional Information
Coding potential Y
Potential coding position 1036443-1036397(-)
Potential amino acid sequence MGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADV
NAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGA
EIDATDKMGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVL
LTRGADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCE
FLIEEGAEIDATDKMGQTALMHSVICDDKQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGN
AELVEVLLTRGADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASV
GKLEVCEFLIEEGAEIDATDKMGQTALMHSVICDDKQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017