Detail information of AT2G03430_circ_g.1


General Information
CircRNA Name AT2G03430_circ_g.1
ID in PlantcircBase ath_circ_012674
Alias AT2G03430_C1, AT2G03430_C1
Organism Arabidpsis thaliana
Position chr2: 1036395-1036541  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI2
Parent gene AT2G03430
Parent gene annotation Ankyrin repeat family protein
Parent gene strand -
Alternative splicing AT2G03430_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03430.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTCAATAAGAAATTCACAAACTTCTAACTTTCCCACGCTTGCTGCCCTGTGAAGCGGAGT
GCAACCAACctgtttgtcatcgcagataactgaatgcatgagtgcagtttgacccattttatcc
gtagcatcgatctctgctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 147
Transcript exons: 1036395-1036541
CTGTTTGTCATCGCAGATAACTGAATGCATGAGTGCAGTTTGACCCATTTTATCCGTAGCATCG
ATCTCTGCTCCTTCTTCAATAAGAAATTCACAAACTTCTAACTTTCCCACGCTTGCTGCCCTGT
GAAGCGGAGTGCAACCAAC

Genomic sequence CTGTTTGTCATCGCAGATAACTGAATGCATGAGTGCAGTTTGACCCATTTTATCCGTAGCATCG
ATCTCTGCTCCTTCTTCAATAAGAAATTCACAAACTTCTAACTTTCCCACGCTTGCTGCCCTGT
GAAGCGGAGTGCAACCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.425734297
Functional Information
Coding potential Y
Potential coding position 1036444-1036397(-)
1036458-1036498(-)
Potential amino acid sequence MGQTALMHSVICDDKQVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTALMHSVICDDK
QVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTALMHSVICDDKQVGCTPLHRAASVGK
LEVCEFLIEEGAEIDATDKMGQTALMHSVICDDKQ
MLRIKWVKLHSCIQLSAMTNRLVALRFTGQQAWES*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Zhang et al., 2019