Plant Circular RNA Database

Detail information of Os03g0363500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0363500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_019926
					
						Alias
						Os_ciR1421
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 14156016-14156295  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os03g0363500						
					
						Parent gene annotation
						
							Similar to Vacuolar monosaccharide symporter 1. (Os03t0363500-01
);Similar to Sugar transporter-like protein. (Os03t0363500-02);S
imilar to solute carrier family 2, facilitated glucose transport
er member 8. (Os03t0363500-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0363500_circ_g.1 						
					
						Support reads
						17/3
					
						Tissues
						root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0363500-01:1
Os03t0363500-02:2

General Information
CircRNA Name	Os03g0363500_circ_g.2
ID in PlantcircBase	osa_circ_019926
Alias	Os_ciR1421
Organism	Oryza sativa
Position	chr3: 14156016-14156295 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene	Os03g0363500
Parent gene annotation	Similar to Vacuolar monosaccharide symporter 1. (Os03t0363500-01 );Similar to Sugar transporter-like protein. (Os03t0363500-02);S imilar to solute carrier family 2, facilitated glucose transport er member 8. (Os03t0363500-03)
Parent gene strand	-
Alternative splicing	Os03g0363500_circ_g.1
Support reads	17/3
Tissues	root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0363500-01:1 Os03t0363500-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAGCTTGAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCT
GGCCTCAGGTAAGCTACGAAGTGATTCGATATATTCctgcagaggaaaagatatagcttgtata
aaatcccaaggcatttattcctcccagctgctgaaagaccatcaggccaacacccacctaagca
tcatagtt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 166
Transcript exons: 14156016-14156100,14156215-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC
CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC
Transcript length: 168
Transcript exons: 14156016-14156120,14156233-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGCTTTCTCTGAAACAAATCTTGAA
CCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC
Transcript length: 192
Transcript exons: 14156016-14156113,14156202-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTGAAACTTCTTACAATGACTGCAAACAAAT
TCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC
Transcript length: 221
Transcript exons: 14156016-14156113,14156173-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGAGGGTAAAATGCAATGCCTTTCAACAGCTT
GAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCA
GGTAAGCTACGAAGTGATTCGATATATTC
Transcript length: 230
Transcript exons: 14156016-14156060,14156092-14156192,14156212-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTAAACACCCACCTAAGCATCA
TAGTTTGATGATTATTTTATTTCTGAAAAACAGCATTTCGCATCATCAAGTTCAGATCTTTTAG
GGTAAAATGCAATGCCTTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC
CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC
Transcript length: 262
Transcript exons: 14156016-14156165,14156184-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGCAATGCCTTTCAACAGCTTGAAACTTCTTACAATGACTGCAA
ACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGAT
ATATTC
Transcript length: 280
Transcript exons: 14156016-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC
TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA
GCTACGAAGTGATTCGATATATTC
						
					

						Genomic sequence
						
							CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC
TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA
GCTACGAAGTGATTCGATATATTC
						
					

			
		

Sequences
Splice junction sequence	ACAGCTTGAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCT GGCCTCAGGTAAGCTACGAAGTGATTCGATATATTCctgcagaggaaaagatatagcttgtata aaatcccaaggcatttattcctcccagctgctgaaagaccatcaggccaacacccacctaagca tcatagtt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 166 Transcript exons: 14156016-14156100,14156215-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC Transcript length: 168 Transcript exons: 14156016-14156120,14156233-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGCTTTCTCTGAAACAAATCTTGAA CCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC Transcript length: 192 Transcript exons: 14156016-14156113,14156202-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGTGAAACTTCTTACAATGACTGCAAACAAAT TCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC Transcript length: 221 Transcript exons: 14156016-14156113,14156173-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGAGGGTAAAATGCAATGCCTTTCAACAGCTT GAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCA GGTAAGCTACGAAGTGATTCGATATATTC Transcript length: 230 Transcript exons: 14156016-14156060,14156092-14156192,14156212-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTAAACACCCACCTAAGCATCA TAGTTTGATGATTATTTTATTTCTGAAAAACAGCATTTCGCATCATCAAGTTCAGATCTTTTAG GGTAAAATGCAATGCCTTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC Transcript length: 262 Transcript exons: 14156016-14156165,14156184-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG CATTTCGCATCATCAAGTTCAGCAATGCCTTTCAACAGCTTGAAACTTCTTACAATGACTGCAA ACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGAT ATATTC Transcript length: 280 Transcript exons: 14156016-14156295 CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA GCTACGAAGTGATTCGATATATTC
Genomic sequence	CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA GCTACGAAGTGATTCGATATATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004837* osi_circ_013055 						
					
						PMCS
						0.554165387

Conservation Information
Conserved circRNAs	osi_circ_004837* osi_circ_013055
PMCS	0.554165387

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14156087-14156275(-)
14156059-14156275(-)
						
						Potential amino acid sequence
						
							MVFQQLGGINALGFYTSYIFSSAGIYRITS*(-)
MPWDFIQAISFPLQEYIESLRSLPEARVQDLFQRKNLFAVIVGVGLMVFQQLGGINALGFYTSY
IFSSAGIYRITS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14156087-14156275(-) 14156059-14156275(-)
Potential amino acid sequence	MVFQQLGGINALGFYTSYIFSSAGIYRITS(-) MPWDFIQAISFPLQEYIESLRSLPEARVQDLFQRKNLFAVIVGVGLMVFQQLGGINALGFYTSY IFSSAGIYRITS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0363500_circ_g.2

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