Detail information of Os03g0363500_circ_g.2


General Information
CircRNA Name Os03g0363500_circ_g.2
ID in PlantcircBase osa_circ_019926
Alias Os_ciR1421
Organism Oryza sativa
Position chr3: 14156016-14156295  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene Os03g0363500
Parent gene annotation Similar to Vacuolar monosaccharide symporter 1. (Os03t0363500-01
);Similar to Sugar transporter-like protein. (Os03t0363500-02);S
imilar to solute carrier family 2, facilitated glucose transport
er member 8. (Os03t0363500-03)
Parent gene strand -
Alternative splicing Os03g0363500_circ_g.1
Support reads 17/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0363500-01:1
Os03t0363500-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGCTTGAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCT
GGCCTCAGGTAAGCTACGAAGTGATTCGATATATTCctgcagaggaaaagatatagcttgtata
aaatcccaaggcatttattcctcccagctgctgaaagaccatcaggccaacacccacctaagca
tcatagtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 166
Transcript exons: 14156016-14156100,14156215-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC
CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC

Transcript length: 168
Transcript exons: 14156016-14156120,14156233-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGCTTTCTCTGAAACAAATCTTGAA
CCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC

Transcript length: 192
Transcript exons: 14156016-14156113,14156202-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTGAAACTTCTTACAATGACTGCAAACAAAT
TCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC

Transcript length: 221
Transcript exons: 14156016-14156113,14156173-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGAGGGTAAAATGCAATGCCTTTCAACAGCTT
GAAACTTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCA
GGTAAGCTACGAAGTGATTCGATATATTC

Transcript length: 230
Transcript exons: 14156016-14156060,14156092-14156192,14156212-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTAAACACCCACCTAAGCATCA
TAGTTTGATGATTATTTTATTTCTGAAAAACAGCATTTCGCATCATCAAGTTCAGATCTTTTAG
GGTAAAATGCAATGCCTTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACC
CTGGCCTCAGGTAAGCTACGAAGTGATTCGATATATTC

Transcript length: 262
Transcript exons: 14156016-14156165,14156184-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGCAATGCCTTTCAACAGCTTGAAACTTCTTACAATGACTGCAA
ACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAAGCTACGAAGTGATTCGAT
ATATTC

Transcript length: 280
Transcript exons: 14156016-14156295
CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC
TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA
GCTACGAAGTGATTCGATATATTC

Genomic sequence CTGCAGAGGAAAAGATATAGCTTGTATAAAATCCCAAGGCATTTATTCCTCCCAGCTGCTGAAA
GACCATCAGGCCAACACCCACCTAAGCATCATAGTTTGATGATTATTTTATTTCTGAAAAACAG
CATTTCGCATCATCAAGTTCAGATCTTTTAGGGTAAAATGCAATGCCTTTCAACAGCTTGAAAC
TTCTTACAATGACTGCAAACAAATTCTTTCTCTGAAACAAATCTTGAACCCTGGCCTCAGGTAA
GCTACGAAGTGATTCGATATATTC
Conservation Information
Conserved circRNAs osi_circ_004837* osi_circ_013055
PMCS 0.554165387
Functional Information
Coding potential Y
Potential coding position 14156087-14156275(-)
14156059-14156275(-)
Potential amino acid sequence MVFQQLGGINALGFYTSYIFSSAGIYRITS*(-)
MPWDFIQAISFPLQEYIESLRSLPEARVQDLFQRKNLFAVIVGVGLMVFQQLGGINALGFYTSY
IFSSAGIYRITS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017