Detail information of Os01g0198200_circ_g.1


General Information
CircRNA Name Os01g0198200_circ_g.1
ID in PlantcircBase osa_circ_000731
Alias NA
Organism Oryza sativa
Position chr1: 5329300-5332508  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0198200
Parent gene annotation Similar to Casein kinase-like protein. (Os01t0198200-01);Similar
to predicted protein. (Os01t0198200-02);Similar to predicted pr
otein. (Os01t0198200-03)
Parent gene strand -
Alternative splicing Os01g0198200_circ_g.2 Os01g0198200_circ_g.3 Os01g0198200_circ_g.4 Os01g0198200_circ_g.5 Os01g0198200_circ_g.6 Os01g0198200_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0198200-02:6
Os01t0198200-01:6
Os01t0198200-03:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCAACAAATTGACGAAATGGTGGTGGACCAATGCCACATAAAGATTCTGGAGAGGTTGCCAT
CTTTTTCTTGCAAACAAGAAAACCTTTATTCTCTCCctttacatgctggccaggaaaagcagat
gttctcagtgtctcctgtgtttcatcgttaggctttcttctaggtatgctcaagatcaaagcca
cctggtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTACATGCTGGCCAGGAAAAGCAGATGTTCTCAGTGTCTCCTGTGTTTCATCGTTAGGCTTT
CTTCTAGGTATGCTCAAGATCAAAGCCACCTGGTCACATGTGGCTGCTGTTGCAGTTATGCGAT
AACCACTATCCCAGCGTTGATGGATTCCTTCACTCGGATATAAGAAATCAAGTTCTACTACCTA
CAAAAGAGATATGCGAGATAATAAAATCTCAAGACTTTTACATATTCAATTGATAGTCAGTGTA
GCTTGCTGCTAAAATGAATTCAATTTTACAAGGCTCTTGGACACTCCAAACGTACCTGATGTGT
GAAACCAGCGTTCCGGGACATAACCACAGCCCATCGGCTTCCTGCTGTGGCCAAGGCAGTGACA
TAGAACCCCTCCTTCCACTTTTTGTTTATCCATTTGAAGGGAAATGAATCACTTACTTTGTAGG
ATTGCTGTGCATATGGCGTTCCTGAGAAGCATTCAAGTCAGTTCTTGGCTTCTTGCTCATAATA
AATACCAACAGTAAACATTACAAGACACCCAAGTGTTTGCGCTGTGAATGGCTTCTCACTACAC
ATATTAACGGTGGTACTTTCTGAATACTTTGATGCATCAACATTTAACAAATTTCACCTCAACA
GTAAACATTACAGGATACCCAAGTGTTTGCGCTGTGAATGGCTTCTCACTACACATATTAACGG
TGGTACTTTCTGAATACTTTGATGCATCAACATTTAACAAATTTCACCTCATCCAGTATTATCT
TGGTCAAGGTAACAATATTAAGTGGTATGTTTATCCAAATGTTGTCTAGCAGTTTATAGTGATT
TCATCATAGCTAGGGGCAAAAGATTGACAGCCTCATCGGTTGCCCATATTTCCTAATAAGCCAA
AATGATTTATTAGAAAATAAAAATTAATTTATAGGTAAAAAATTGTATATGTGTTCTTAGCAAC
TTAAAAGCCAATATTAAAAAAACTATGTTCAAAATATCTTAAAATTAACTTCAAAATTAAGTTT
GAAAATTCAAATTTTGGCTTTTGCTTTGGCTTATTAGGCCAACCAATGAAACCTTGATTTTATA
TATTAAACCCATGTCATGTACTAATGTTATCAACTATATGCTGCTTAGCATAGTGTTGATTTAC
CCCAAAGAGAACATTTGTTTGAGAATTTTTCTTTATTAAAATCAAATATTTATCATGGTTTTGA
TTAATATCCAGTTCTTTTAGTATTCGATTACGTGTTTCAGTACACATTTGATGAGTTTACTGTA
GTTCTTCTCTGAGATGAATCGTTGCGCTTGTTACATAATGATCCTGGCACCGAACATGCAAATT
CAGGACTAAAGGCATCAAAATGAAACTGTATACCTGTTGACATGATCACCACCGAGCTTCCATT
ATTTGAACCAGCCAAAGAAGTAATATAGTAATTTCTCTCCCACTGCTCCATTATCCATTCCTAT
CAAAGCGCACAGTTAAAGTTGTGATTATACATTTATCTCAGTGTTCTAAAAGTCAGCTCCAGGC
GCCGGTTAGCCGCCGCGATTAGGCATTAGATGGTGCATTAAGAGGCTGAACTAACTTGGGTGGT
GTTTCCTTGCTATTTTAGTGTTATATAGTCTTGTTTTTATGCAATATGCTTGCTAATTTCTTGG
ATTTGACTAGTTAGCCTAACCTAGGCGCCCCCCAGCCGCCGGACTAGTGCCTGGCACCTTGTTG
TCCCAAAATATAGGCAATTCTAGAGTTCTTCAGGGGGTTAAGGAGAGGTGAAATTAAAACAGGG
ATGGTTGTGATTGGTTGAGATGAGGAAGTAGATGGAGAAATTAAATAAGAGATGGCGGTGATTA
GTTGAGATGATGGAATGGGTGAAGTAGCAACATTTTGAGACAAATTTTGAATGCAAGAAGTTAC
TATATTTTGGGACGGAGGGAGTAGAAAACAATACCATGAGATGGCAATTAGGATAGAGCTGAGT
ATGCTTGATTAGTAACCAACCACAGATAGGAAAAAAAATACATACTCAATAGTAGGATGACACG
CAATTATTTACCTTGTGAAGAAAGTAATGGGAGAGTTCATGTACTTGGGCGGTAAAACCAGTGC
CAGCATCCATAATTAAAGCCCACAGATCTGAACAGGATGAAACTGAACTTATAAACAAACCATC
TTCATTTCCTTTTTGAATATGTGGTGCTAATCTATCATCTGCTACATTGTAGTGGTATCTGAAA
AATAAATGTGGTCAGACAATAGAGTATTATTTTACTGCTACCAAGCAGATTACTGTGCCATACC
TCTGTTTCATTGGCCGACGGGCATTGTACACACTAATCCACTGGGTCGCTGGCATTCCCATTCT
AATCTTTTTCTTAGGTTGCTCCTCATCTTCAGCCGCTGTGAGGCGGCCTCTCTTCTGACCAACC
TGATATACAAGCTGGCAGCAATCCAACAAAGCATTATGCAGGTAGCCCGCTATTACATAAAGAA
ATAAGGAATTATTTAATATGTCACTAGATTTTGCCAGTTAACTATTTTACCACCAAAATACATT
TGATATTGAATATGTCACTGTCTCTAAAGACCAATCTGATCATGTGGTCTTAATGGCAGGACAT
TGACTATGTTTTAGTCTATGCAGGTCATACTCGTTATTTGGTGTTTCATATTACAGAAAGCTAG
GACAGGAAGTTCAAAGGCAGGTTCACAATTGAGTTGTTTCATAGTGGGACATAGATTTCCTTCA
CTAAAACCTAAAAGCACAAGGTTGGCATTGAACTAATTGGAATTCTTGGGAAATAATATTAGTT
ATAACACTAGTGATGACTCTCAAGCCCAAGGATAGAATCAGGTAACTTTAATTATTTACTAGTG
CTTTGAATTTTGATCCGAGAAATAGGGAATTGGAACTGAGATTCCTACACGATCATTTTTTCTG
ACAGATGATACAGACGCAGATTAAAATGGTTGAAGGAATAATGTACCTTCTGGGCACCATCGGT
GTTTAATGGTCTTCCATCTGGATTTGGACCAACAATGCCATCAAAAAGAGCAATGCACTTTGCA
TAGTTTGGCTCTTCGTCGAACTTCAAGTTCACAACATACTCAACAAATTGACGAAATGGTGGTG
GACCAATGCCACATAAAGATTCTGGAGAGGTTGCCATCTTTTTCTTGCAAACAAGAAAACCTTT
ATTCTCTCC
Conservation Information
Conserved circRNAs osi_circ_011352
PMCS 0.13285389
Functional Information
Coding potential Y
Potential coding position 5332442-5329426(+)
5332314-5329355(+)
5332474-5329302(-)
Potential amino acid sequence MPHKDSGEVAIFFLQTRKPLFSPFTCWPGKADVLSVSCVSSLGFLLGMLKIKATWSHVAAVAVM
R*(+)
MVFHLDLDQQCHQKEQCTLHSLALRRTSSSQHTQQIDEMVVDQCHIKILERLPSFSCKQENLYS
LPLHAGQEKQMFSVSPVFHR*(+)
MATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVY
QVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNED
GLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVV
IMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFL
YPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKGENKGFLV
CKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQ
KLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQK
GNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNG
SSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVE
LDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKGENK
GFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNT
DGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAP
HIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAG
SNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTH
QVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVK
GENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGR
PLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADD
RLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYIT
SLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNA
GFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPG
QHVK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017