Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0198200_circ_g.1 |
| ID in PlantcircBase | osa_circ_000731 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 5329300-5332508 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0198200 |
| Parent gene annotation |
Similar to Casein kinase-like protein. (Os01t0198200-01);Similar to predicted protein. (Os01t0198200-02);Similar to predicted pr otein. (Os01t0198200-03) |
| Parent gene strand | - |
| Alternative splicing | Os01g0198200_circ_g.2 Os01g0198200_circ_g.3 Os01g0198200_circ_g.4 Os01g0198200_circ_g.5 Os01g0198200_circ_g.6 Os01g0198200_circ_g.7 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os01t0198200-02:6 Os01t0198200-01:6 Os01t0198200-03:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_011352 |
| PMCS | 0.13285389 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5332442-5329426(+) 5332314-5329355(+) 5332474-5329302(-) |
| Potential amino acid sequence |
MPHKDSGEVAIFFLQTRKPLFSPFTCWPGKADVLSVSCVSSLGFLLGMLKIKATWSHVAAVAVM R*(+) MVFHLDLDQQCHQKEQCTLHSLALRRTSSSQHTQQIDEMVVDQCHIKILERLPSFSCKQENLYS LPLHAGQEKQMFSVSPVFHR*(+) MATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVY QVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNED GLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVV IMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFL YPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKGENKGFLV CKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQ KLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQK GNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNG SSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVE LDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKGENK GFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNT DGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAP HIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAG SNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTH QVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVK GENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGR PLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADD RLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYIT SLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNA GFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPG QHVK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |