Detail information of Os10g0546300_circ_g.4


General Information
CircRNA Name Os10g0546300_circ_g.4
ID in PlantcircBase osa_circ_007897
Alias NA
Organism Oryza sativa
Position chr10: 21352026-21353750  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0546300
Parent gene annotation Protein of unknown function DUF2451, C-terminal domain containin
g protein. (Os10t0546300-01)
Parent gene strand +
Alternative splicing Os10g0546300_circ_g.2 Os10g0546300_circ_g.3 Os10g0546300_circ_g.5 Os10g0546300_circ_g.6 Os10g0546300_circ_g.7 Os10g0546300_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0546300-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGCCCAAGCTCCGGCCCTGCTTATTAAGAACCTTTCAGAGTTTGTTTTCATTGATGTGCTCA
TATTATACTATAATGAGCTTTTGCCCAGGAGTAAAGgatgttcttccaattcttacagaacttc
gtaatgcacaagacatgcagatggaacttgaaagttttgtggagaaagaaaactattttcaggt
gagctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGTTCTTCCAATTCTTACAGAACTTCGTAATGCACAAGACATGCAGATGGAACTTGAAAGTT
TTGTGGAGAAAGAAAACTATTTTCAGGTGAGCTGAATTTTATCCATGACTGCTGTTTTCTCTAT
CTGTTTCATGAATCCATCTCTTTTACTCTAGGGTGATATTAGCTACTGCTTTATTTTACTCCAG
TAGTTTTCAACCCCATAAATCACCTGACCTGTTGTAGTATGTTGGTTGCTCCACAGTCTGAACT
ACCACAGTAGTTGTTTCTTATGCTGTTAATCACCTATGCCTTCTTATATTTATGGTAGTTTTCT
TATGCCATGTTGCTGATGTTTGCAGGCGTTTCAATTATTGCCTGAATATTTGCAAATCTTGGAG
AACTATTCAGGCCTTTCTTCTGTACAAGAAATGGGGCGTGGGATTGAGGTAATTGTTATTATTT
TATTGCATTTATTGCTTGCTTCTATGTCAAGTGTAGAATGCATTGAACCTATCTTCATCTCAAA
GCTTTCTTTTGGTATGTTCAAAGAGCAAAAGAAACTTGTCCACCATCAAATTGAACAAATAGCT
GTATAATGTTTGTCCTTTTGATGGTGTTTATACTATGAATACATCCTCAGGCATGGTTGGCACG
AACAATCCAAAAATTAGACACCCATTTACTAGGGGTTTGTCAGACCTTCCATGAGGAAAGCTAT
CTAACTGTGAGTATTTCCATTGTTGTTTTTCCTCGTGAGCCCTTGATTGGCTTAGTTGTTAGGG
AAGTCTTAGTTATCTATTTGCTTTGCTAATTTACAAGTTCCATTCTTTATATGTTTACACGTGG
ACAATAGGTTATTGATGCCTATGCGCTGATGGGTGACATCGGTGGCATGGCTGAAAAGATGCAG
AGTTTCTTTTTGCAAGAAGTACTCTCTCAGACTCATTATGTCCTGAAAGAAATGTTGGAAGAGG
TATTGGATTTGATCAGTTAATATACCAATTTCTTGATAGTTTATTTTATCCATTTTCTAATTGG
AAAATAATTACAGGAGGTTGGAAATAATACGCAGAGAAATAGGTATGTACTAGCACTTATCTTG
GTTCCACTGATTGTCTAAATATAACTGTCAGTGGTTTTGAATTTTATGGATTATTTCGCTGTCA
GAAAAAAGTACATAACTTATGGATTTCTGTGCTTAAATACTATAAGGGGGATTATTTCCTAAAA
TTGCTCATCTGAGTTTGAATGTTTGATAGGTTTCAAGGTTATTGTCTGAAGTTGTGAACTTAAT
TGTTTTTTTATGTTTTATGTACTTTTTCTGAGAAAGATTGTGGTATGTTTGGGTCTGCTGCTGA
AATTAGTACTGGTCTATTCCATAAATAGTTGGATCCCCCCAGTTCAAGTTTACTTATGTTGACC
ATTTCTGATCATCTAAACTTGTGTAAGATATATGCTACCTATCATTTATGGGACATTCTACTGA
CGAAACCACCTCTGCTTTCTAGATGGAATTATCTGAGCTAGAAACTTGAAGTATAAGGCTAAAC
ACATAAGTTTCCATGGGTACATGTCTCTCTCTAATCTGTTCTCGTTTCCTTTCCAGATTTACAT
ATAGTGATCTTTGTGCTCAAGTTCCTGAGCCCAAGCTCCGGCCCTGCTTATTAAGAACCTTTCA
GAGTTTGTTTTCATTGATGTGCTCATATTATACTATAATGAGCTTTTGCCCAGGAGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.121781121
Functional Information
Coding potential Y
Potential coding position 21352069-21353747(+)
21352071-21353719(-)
Potential amino acid sequence MQMELESFVEKENYFQAFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQ
TFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSD
LCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEK
ENYFQAFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVI
DAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLR
PCLLRTFQSLFSLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLP
EYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGG
MAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLF
SLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLPEYLQILENYSG
LSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQ
EVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMS
FCPGVK(+)
MSCALRSSVRIGRTSFTPGQKLIIV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017