Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0546300_circ_g.4 |
ID in PlantcircBase | osa_circ_007897 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 21352026-21353750 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0546300 |
Parent gene annotation |
Protein of unknown function DUF2451, C-terminal domain containin g protein. (Os10t0546300-01) |
Parent gene strand | + |
Alternative splicing | Os10g0546300_circ_g.2 Os10g0546300_circ_g.3 Os10g0546300_circ_g.5 Os10g0546300_circ_g.6 Os10g0546300_circ_g.7 Os10g0546300_circ_g.8 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0546300-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.121781121 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21352069-21353747(+) 21352071-21353719(-) |
Potential amino acid sequence |
MQMELESFVEKENYFQAFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQ TFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSD LCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEK ENYFQAFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVI DAYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLR PCLLRTFQSLFSLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLP EYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGG MAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLF SLMCSYYTIMSFCPGVKDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLPEYLQILENYSG LSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQ EVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMS FCPGVK(+) MSCALRSSVRIGRTSFTPGQKLIIV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |