Detail information of Os04g0591100_circ_g.2


General Information
CircRNA Name Os04g0591100_circ_g.2
ID in PlantcircBase osa_circ_025027
Alias NA
Organism Oryza sativa
Position chr4: 29895921-29896246  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0591100
Parent gene annotation Protein of unknown function DUF597 family protein. (Os04t0591100
-01)
Parent gene strand -
Alternative splicing Os04g0591100_circ_g.1
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTCAGCTGCCGTTTCTTCCAAAGAAAGGGTGCAATCAGCTGCTCCAGCTAATCCAATGCCGA
GAAGGAAGAAATGCCGAGGCTTGCTTGCTTGCTCACagagataagctgctggagatggaacaga
acagaggcattcgctgccaattcaagaaagttggttattccgatccttggactgttcctaatgc
gtgtgggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 326
Transcript exons: 29895921-29896246
AGAGATAAGCTGCTGGAGATGGAACAGAACAGAGGCATTCGCTGCCAATTCAAGAAAGTTGGTT
ATTCCGATCCTTGGACTGTTCCTAATGCGTGTGGGGAAAGAGAGGCCGTTGGTTGAACTGGACA
CAACTGCAACTGCAAGTCTCAAGAGACCTTTTTCTCGTTCGAGTTAAGCTTCGCTTAGCTCTTT
GAGTGTTCCAATGGGAACCGAACAGAGGAGCAGCAGCTCAGCTGCCGTTTCTTCCAAAGAAAGG
GTGCAATCAGCTGCTCCAGCTAATCCAATGCCGAGAAGGAAGAAATGCCGAGGCTTGCTTGCTT
GCTCAC

Genomic sequence AGAGATAAGCTGCTGGAGATGGAACAGAACAGAGGCATTCGCTGCCAATTCAAGAAAGTTGGTT
ATTCCGATCCTTGGACTGTTCCTAATGCGTGTGGGGAAAGAGAGGCCGTTGGTTGAACTGGACA
CAACTGCAACTGCAAGTCTCAAGAGACCTTTTTCTCGTTCGAGTTAAGCTTCGCTTAGCTCTTT
GAGTGTTCCAATGGGAACCGAACAGAGGAGCAGCAGCTCAGCTGCCGTTTCTTCCAAAGAAAGG
GTGCAATCAGCTGCTCCAGCTAATCCAATGCCGAGAAGGAAGAAATGCCGAGGCTTGCTTGCTT
GCTCAC
Conservation Information
Conserved circRNAs osi_circ_014721
PMCS 0.222729473
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017