Detail information of Os04g0591100_circ_g.1


General Information
CircRNA Name Os04g0591100_circ_g.1
ID in PlantcircBase osa_circ_025026
Alias NA
Organism Oryza sativa
Position chr4: 29895919-29896246  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0591100
Parent gene annotation Protein of unknown function DUF597 family protein. (Os04t0591100
-01)
Parent gene strand -
Alternative splicing Os04g0591100_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-CG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTCAGCTGCCGTTTCTTCCAAAGAAAGGGTGCAATCAGCTGCTCCAGCTAATCCAATGCCGA
GAAGGAAGAAATGCCGAGGCTTGCTTGCTTGCTCACtcagagataagctgctggagatggaaca
gaacagaggcattcgctgccaattcaagaaagttggttattccgatccttggactgttcctaat
gcgtgtgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 328
Transcript exons: 29895919-29896246
TCAGAGATAAGCTGCTGGAGATGGAACAGAACAGAGGCATTCGCTGCCAATTCAAGAAAGTTGG
TTATTCCGATCCTTGGACTGTTCCTAATGCGTGTGGGGAAAGAGAGGCCGTTGGTTGAACTGGA
CACAACTGCAACTGCAAGTCTCAAGAGACCTTTTTCTCGTTCGAGTTAAGCTTCGCTTAGCTCT
TTGAGTGTTCCAATGGGAACCGAACAGAGGAGCAGCAGCTCAGCTGCCGTTTCTTCCAAAGAAA
GGGTGCAATCAGCTGCTCCAGCTAATCCAATGCCGAGAAGGAAGAAATGCCGAGGCTTGCTTGC
TTGCTCAC

Genomic sequence TCAGAGATAAGCTGCTGGAGATGGAACAGAACAGAGGCATTCGCTGCCAATTCAAGAAAGTTGG
TTATTCCGATCCTTGGACTGTTCCTAATGCGTGTGGGGAAAGAGAGGCCGTTGGTTGAACTGGA
CACAACTGCAACTGCAAGTCTCAAGAGACCTTTTTCTCGTTCGAGTTAAGCTTCGCTTAGCTCT
TTGAGTGTTCCAATGGGAACCGAACAGAGGAGCAGCAGCTCAGCTGCCGTTTCTTCCAAAGAAA
GGGTGCAATCAGCTGCTCCAGCTAATCCAATGCCGAGAAGGAAGAAATGCCGAGGCTTGCTTGC
TTGCTCAC
Conservation Information
Conserved circRNAs osi_circ_014721
PMCS 0.219216895
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017