Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | BGIOSGA029261_circ_g.3 |
ID in PlantcircBase | osi_circ_008234 |
Alias | 9:21290502|21293426 |
Organism | Oryza sativa ssp. indica |
Position | chr9: 21290502-21293426 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA029261 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA029261_circ_g.1 BGIOSGA029261_circ_g.2 BGIOSGA029261_circ_g.4 BGIOSGA029261_circ_g.5 BGIOSGA029261_circ_g.6 BGIOSGA029261_circ_g.7 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA029261-TA:6 |
Conservation Information | |
---|---|
Conserved circRNAs | osa_circ_040204* |
PMCS |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
21293419-21290504(-) 21292910-21290748(+) |
Potential amino acid sequence |
MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKA(-) MKLPIILLALPTTLERAGSSTIFICRGVAMTGCKIGGYRVSPTVFSSLPFQIMILVPEVICPVV IGRVPRTLKIPIFSLFTNKGNDIPGYITPIAFDPVFLKSFSTCIASMTMESNDCVAAKSLVTSL LLSEVFPYRMAFVTTQREFGSIDLFVSNNFRRDIPTPSQSPSFSSFPQ*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | leaf senescence |
Other Information | |
---|---|
References | Huang et al., 2021 |