Detail information of BGIOSGA029261_circ_g.3


General Information
CircRNA Name BGIOSGA029261_circ_g.3
ID in PlantcircBase osi_circ_008234
Alias 9:21290502|21293426
Organism Oryza sativa ssp. indica
Position chr9: 21290502-21293426  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA029261
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA029261_circ_g.1 BGIOSGA029261_circ_g.2 BGIOSGA029261_circ_g.4 BGIOSGA029261_circ_g.5 BGIOSGA029261_circ_g.6 BGIOSGA029261_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA029261-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCTGTAGTCATAGGCAGAGTTCCTAGAACCTTGAAGATCCCTATCTTTTCTTTGTTCACTAA
CAAAGGGAATGACATCCCTGGATACATCACACCGATcgcctttgacccagtatttttaaaatcc
ttcagcacttgcattgcatcaatgactatggaatcgaatgactgtgttgctgcaaagagtttgg
tgacatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCTTTGACCCAGTATTTTTAAAATCCTTCAGCACTTGCATTGCATCAATGACTATGGAATCG
AATGACTGTGTTGCTGCAAAGAGTTTGGTGACATCACTCTTACTGAGCGAGGTGTTCCCATACA
GAATGGCATTTGTCACAACCCAGCGTGAATTTGGATCAATCGACTTGTTTGTTTCCAATAACTT
TAGAAGAGACATTCCAACACCATCCCAATCCCCCTCTTTCTCATCATTTCCACAATAAAATCGT
GTCCTGATTCTTGAGAGAATAGTCGGGCATATCAGGTTTATCCACCTTGAAAGTCATGTAATAT
TATTAGAACAAAATAATTTATAAATCCATGCATCTAAAATAATGTTTTAAAAAGTAATTTGACA
CTAACCTCACAGATACTACCAGAATAGTAATACGATGCCCGAAAATCACCCAAGGATCATCAAG
CAGCAATTTAAGCTGGATGCAAAACAAAATGTGTGTATGAGCTAAGAATCTAAAGTAGTGAAAG
AACTAATCTTTCACGCGAAGTTACCATATCCACGTCATCAAAAAATTGTGAGCCATCCGATTTT
CACTCTAAGCGTTATACTGAAAAGAGCATATGCAAAGATAGAATCAAATGAAAAGTTGGAATAC
CTTATTGGGAATTTCTTTTAACCCCTATAAAGGCACTTAATCTGAATATAGACTTATCATCATG
GCCTTAGCAGCGGGACAAAGGTAAAATGAGTAAATAAGAATTTATAATTTCTATGGAAAATGGT
TTAAATGTACTACTATTATATATATGCTCTGTCCATTCATTTTTAGATGGTTAAGATGAAGAAC
TACCAAAGTTTTTTAATGCTTTCAGTATTGACATTGAAAAAAATGGTACTCTTTAATACAAGCT
GTTCTTCAGGTAATAGCGAGGTGGAGCTTTAAACAAAAATTTACCAGATTTAAGTAAATTTGTA
TTCATTTAAATGAGAAAACTGCTGATTCTCAATAACCAGATTTATGTTTGGTTCGCACTATGTT
TATACATTCATTTAAACTATTGACACTTGAATTGTTTATCTTATTGGTGGTCCTATTTTATTTT
GGTTCAGAACACATTTATCAGAGTCCAGAAATATCTTATATAAATTAGATACCACAAATATACA
ACGTGTGCAATCATACTCCAGAAATATCGTATATAAATTAGATAGCACAAATATACAACGTGTG
CAATCATACTTGACTGTATCTACGTGTACTGTCATCGCACCTGCTACAAGTCTGATGACAGATT
CATCAATATGAACAAGCTCAAGGCTTCCACTTCTGGTGGTTAGCTTCGATTAATTGTATTTGCA
TTGTACCTGTTCTGTATCACTGCATATGCATAACTCAAGACAGTGTGCCAGCTGAAGTTTTGTG
ATCATTTTCTAGAGGTTATTGGCTATTTTGCTTTCCTTAGTAACACAATTTTATTTGTACTGTC
ATTGTTAGATGGAGGTTCTTCAAGAATTATAATTACTCTCTTTGATTTTTAGAAGTAAAACATT
TTAACTATTTCAACAGGTCACATTAAATATGTTTACAACTGTAGTTATAACAGAAACTTCGCAC
AAATTCCATTTCATAATAATACAAGAGTATGAATGCATCTGAAACACCTTGATGTCATCATGAT
CAAAAACATTTTCCCCCCTTAATGAACTGGCAAGAATCACTGACAGGTTGTTGTTTAATACTCT
GTAGAGTAATGAATATTCAGTTTTGTAATTGGAAGAGAAAAGGTAGTATATGCACTGTAAAATA
TTAAACATTTACGCTTGAACATAGTATTTGAGCCTTGAGCGAGAAACATTGGATTGTTATTAAC
AGGTCCTATGATTCCGCAAAAAAAAAAAAAGGCATAAGTATACAAGTCGTCCATACGGGCATAT
AAAGTCGCGCAACGCGTGACTACGTGGCTAGTTAAACATGATTCCCTAAAGGTAATTGAAAGGC
TGATTCTGGTAGTAAGTACCTGGGTGGTTGTTATGTCAGTCATAACTGTTGAACCACATCTGTT
GTGAGGGACCAACTCATCAAACCGGTCAAGGAAGATCAGAAGTGGACCATCACGTGATTCAGGT
CTCTGTATGCAGGTGTTGATCTACAATTCATTCAATAGTTAATTATAATAGTATCAAATACAAA
CAAATAAAATGACAAAAATTAACTGTGAAAGTATACCTTAAGCCATATCTTACCTGTGAGACAG
AGTCAGAAGGGAAGTCCTTGATGAGTGACGAAGCATCCACGCTCGCAACAGGAAGACCAAGGGT
CCTTCCTATCCCTTCAACCACAGCTTTTTTATCACATGGACCATGTAAGAGAAATGTCATTTTG
CCCTTTGTGGCCTCATGTGGGAGGTGAGTATAGTAACTCATGAAATTACCAATCATCTGCAAAT
TAACAAAGATACAACATGAGAAACAAAAAAAGATCAAGATATATAGTCAAGTAAAGGCCTTAGA
CAAACTAGAACTATCTCATCCTTAGACAAACTAGAACTATCTCAATTCATACATACCACTAGAA
GAACTAACTCAATCCATACCTTACTGGCTCTGCCAACCACATTAGAAAGAGCGGGGTCATCCAC
CATTTTCATTTGCAGAGGAGTTGCAATGACTGGATGTAAGATTGGTGGGTACAGGGTCTCTCCA
ACAGTTTTCTCATCACTACCTTTCCAAATCATGATCTTGGTCCCTGAGGTAATTTGTCCTGGGA
GTTTATGAAAAGAAAACACCGTTGGTTATAATAATTTCAGTATGCACTCAACAGATTTAAAATA
TATAAGTCCAACCTGTAGTCATAGGCAGAGTTCCTAGAACCTTGAAGATCCCTATCTTTTCTTT
GTTCACTAACAAAGGGAATGACATCCCTGGATACATCACACCGAT
Conservation Information
Conserved circRNAs osa_circ_040204*
PMCS
Functional Information
Coding potential Y
Potential coding position 21293419-21290504(-)
21292910-21290748(+)
Potential amino acid sequence MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT
PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG
LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT
QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL
ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV
MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT
PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG
LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT
QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL
ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV
MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT
PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG
LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT
QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL
ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKAIGV
MYPGMSFPLLVNKEKIGIFKVLGTLPMTTGQITSGTKIMIWKGSDEKTVGETLYPPILHPVIAT
PLQMKMVDDPALSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTLG
LPVASVDASSLIKDFPSDSVSQINTCIQRPESRDGPLLIFLDRFDELVPHNRCGSTVMTDITTT
QLKLLLDDPWVIFGHRITILVVSVRWINLICPTILSRIRTRFYCGNDEKEGDWDGVGMSLLKLL
ETNKSIDPNSRWVVTNAILYGNTSLSKSDVTKLFAATQSFDSIVIDAMQVLKDFKNTGSKA(-)
MKLPIILLALPTTLERAGSSTIFICRGVAMTGCKIGGYRVSPTVFSSLPFQIMILVPEVICPVV
IGRVPRTLKIPIFSLFTNKGNDIPGYITPIAFDPVFLKSFSTCIASMTMESNDCVAAKSLVTSL
LLSEVFPYRMAFVTTQREFGSIDLFVSNNFRRDIPTPSQSPSFSSFPQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021