Plant Circular RNA Database

Detail information of Os06g0617800_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os06g0617800_circ_g.3
					
						ID in PlantcircBase
						osa_circ_031381
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 24791095-24792367  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0617800						
					
						Parent gene annotation
						
							Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosy
l pyrophosphate synthetase 2). Splice isoform 1. (Os06t0617800-0
1);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphorib
osyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061780
0-02);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phospho
ribosyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061
7800-03);Similar to Ribose-phosphate pyrophosphokinase. (Os06t06
17800-04);Similar to Ribose-phosphate pyrophosphokinase. (Os06t0
617800-05)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0617800_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0617800-01:3
Os06t0617800-05:3
Os06t0617800-04:3
Os06t0617800-02:3
Os06t0617800-03:3

General Information
CircRNA Name	Os06g0617800_circ_g.3
ID in PlantcircBase	osa_circ_031381
Alias	NA
Organism	Oryza sativa
Position	chr6: 24791095-24792367 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0617800
Parent gene annotation	Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosy l pyrophosphate synthetase 2). Splice isoform 1. (Os06t0617800-0 1);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphorib osyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061780 0-02);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phospho ribosyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061 7800-03);Similar to Ribose-phosphate pyrophosphokinase. (Os06t06 17800-04);Similar to Ribose-phosphate pyrophosphokinase. (Os06t0 617800-05)
Parent gene strand	-
Alternative splicing	Os06g0617800_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0617800-01:3 Os06t0617800-05:3 Os06t0617800-04:3 Os06t0617800-02:3 Os06t0617800-03:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATCGGCAAAACGCTTGATGAGGAC
CTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTCctctgacatgttgtgaccctgtcttctc
ttatcaacgatagctaaaggggcatcagataatttcttagcaaatgcacgtgctctgacaacac
cacccaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 558
Transcript exons: 24791095-24791259,24791383-24791526,24792119-24792367
CTCTGACATGTTGTGACCCTGTCTTCTCTTATCAACGATAGCTAAAGGGGCATCAGATAATTTC
TTAGCAAATGCACGTGCTCTGACAACACCACCCACATCAGGAGAAACCACCACAAGATCCTTAG
ATATTGTCTTACTGGCAAGGTAATCCAGAATCACAGGCTGTCCATGTATATGATCCACAGGAAT
ATCGAAGTATCCCAATGCTTGAGTGGAATGAATATCACATACAATTACACGATCACTCCCAGCT
TCTGTAAGTAAATTAGCAGAAAGTTTGGCAGTAATGGCCTCACGTCCTTGAGCCTTTCTGTCAG
CTCTGGCATACCCAAAGTATGGAATGACAACAGTAATAGACCTCGCCGACGCCCGCCGACATGC
GTCGATCATGACAAAAAGCTCCATAAGGTTTTCATTAACAGGGGAGCAGGTGGGCTGCACCAAG
AACACATCGCAACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATCGGCAAAACGCT
TGATGAGGACCTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTC
						
					

						Genomic sequence
						
							CTCTGACATGTTGTGACCCTGTCTTCTCTTATCAACGATAGCTAAAGGGGCATCAGATAATTTC
TTAGCAAATGCACGTGCTCTGACAACACCACCCACATCAGGAGAAACCACCACAAGATCCTTAG
ATATTGTCTTACTGGCAAGGTAATCCAGAATCACAGGCTACATATAACAAAGATTCAATCGTTA
CTTTGCTGCCAACTCAGATCCAGCTAAGAAAATTGCGTACAACTGAAAACAGCATTTAGGTAAT
AAAAGGAACATATCTTGGTCTGTTAAGAGTACCTGTCCATGTATATGATCCACAGGAATATCGA
AGTATCCCAATGCTTGAGTGGAATGAATATCACATACAATTACACGATCACTCCCAGCTTCTGT
AAGTAAATTAGCAGAAAGTTTGGCAGTAATGGCCTCACGTCCTTGAGCCTACACTACAAAAGAA
TCAACTTAGTTCATGAAAACAAAAGTGCATTCACATGAGGGAGAAACAGTGGTCATGAAACATT
GCAAATAGTGTTCAACAGATTCAGCCAACATAATAAAGCAAAAGGAATTGCTAATGTTTGGAAG
GGAAAATCCATAAGGGGTCCAGCGAGCACATTGCTGAAGCAGAGATAACAGAAAATGGCAGAGA
AAAGGTGCTTGTAGCAAGTAAACAGGTAGAAGATATGGTCATATTCTGATTTCTGTAATTATGC
TTTTCTTGTCAGGATTTGTAAAAAGCATAATAAACACTATCACCACCAATCTGCGTGCTTAATG
GCTTCTGTAGTATCATCTGAACGTTAATTTTGACCCCCTTTAGTACCAGCAGTGTCAGTGTGTA
ATAAATTTAAGTACACCACAATAGCAAAAATCTTAGACAAGGAAAAGGGTTACATCCACTAGAA
ATGGGACAGTAACAAATTAGCTACCACGATAAGGGAAGAAGATATCCAGTAAAAATGAAATTGC
ATGATGATCAGTACAAACACACTTGGCATACCGCAACAGCCATCAATTAAGAGTTTATACATAC
CTTTCTGTCAGCTCTGGCATACCCAAAGTATGGAATGACAACAGTAATAGACCTCGCCGACGCC
CGCCGACATGCGTCGATCATGACAAAAAGCTCCATAAGGTTTTCATTAACAGGGGAGCAGGTGG
GCTGCACCAAGAACACATCGCAACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATC
GGCAAAACGCTTGATGAGGACCTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTC
						
					

			
		

Sequences
Splice junction sequence	AACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATCGGCAAAACGCTTGATGAGGAC CTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTCctctgacatgttgtgaccctgtcttctc ttatcaacgatagctaaaggggcatcagataatttcttagcaaatgcacgtgctctgacaacac cacccaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 558 Transcript exons: 24791095-24791259,24791383-24791526,24792119-24792367 CTCTGACATGTTGTGACCCTGTCTTCTCTTATCAACGATAGCTAAAGGGGCATCAGATAATTTC TTAGCAAATGCACGTGCTCTGACAACACCACCCACATCAGGAGAAACCACCACAAGATCCTTAG ATATTGTCTTACTGGCAAGGTAATCCAGAATCACAGGCTGTCCATGTATATGATCCACAGGAAT ATCGAAGTATCCCAATGCTTGAGTGGAATGAATATCACATACAATTACACGATCACTCCCAGCT TCTGTAAGTAAATTAGCAGAAAGTTTGGCAGTAATGGCCTCACGTCCTTGAGCCTTTCTGTCAG CTCTGGCATACCCAAAGTATGGAATGACAACAGTAATAGACCTCGCCGACGCCCGCCGACATGC GTCGATCATGACAAAAAGCTCCATAAGGTTTTCATTAACAGGGGAGCAGGTGGGCTGCACCAAG AACACATCGCAACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATCGGCAAAACGCT TGATGAGGACCTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTC
Genomic sequence	CTCTGACATGTTGTGACCCTGTCTTCTCTTATCAACGATAGCTAAAGGGGCATCAGATAATTTC TTAGCAAATGCACGTGCTCTGACAACACCACCCACATCAGGAGAAACCACCACAAGATCCTTAG ATATTGTCTTACTGGCAAGGTAATCCAGAATCACAGGCTACATATAACAAAGATTCAATCGTTA CTTTGCTGCCAACTCAGATCCAGCTAAGAAAATTGCGTACAACTGAAAACAGCATTTAGGTAAT AAAAGGAACATATCTTGGTCTGTTAAGAGTACCTGTCCATGTATATGATCCACAGGAATATCGA AGTATCCCAATGCTTGAGTGGAATGAATATCACATACAATTACACGATCACTCCCAGCTTCTGT AAGTAAATTAGCAGAAAGTTTGGCAGTAATGGCCTCACGTCCTTGAGCCTACACTACAAAAGAA TCAACTTAGTTCATGAAAACAAAAGTGCATTCACATGAGGGAGAAACAGTGGTCATGAAACATT GCAAATAGTGTTCAACAGATTCAGCCAACATAATAAAGCAAAAGGAATTGCTAATGTTTGGAAG GGAAAATCCATAAGGGGTCCAGCGAGCACATTGCTGAAGCAGAGATAACAGAAAATGGCAGAGA AAAGGTGCTTGTAGCAAGTAAACAGGTAGAAGATATGGTCATATTCTGATTTCTGTAATTATGC TTTTCTTGTCAGGATTTGTAAAAAGCATAATAAACACTATCACCACCAATCTGCGTGCTTAATG GCTTCTGTAGTATCATCTGAACGTTAATTTTGACCCCCTTTAGTACCAGCAGTGTCAGTGTGTA ATAAATTTAAGTACACCACAATAGCAAAAATCTTAGACAAGGAAAAGGGTTACATCCACTAGAA ATGGGACAGTAACAAATTAGCTACCACGATAAGGGAAGAAGATATCCAGTAAAAATGAAATTGC ATGATGATCAGTACAAACACACTTGGCATACCGCAACAGCCATCAATTAAGAGTTTATACATAC CTTTCTGTCAGCTCTGGCATACCCAAAGTATGGAATGACAACAGTAATAGACCTCGCCGACGCC CGCCGACATGCGTCGATCATGACAAAAAGCTCCATAAGGTTTTCATTAACAGGGGAGCAGGTGG GCTGCACCAAGAACACATCGCAACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATC GGCAAAACGCTTGATGAGGACCTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_016429 						
					
						PMCS
						0.186814441

Conservation Information
Conserved circRNAs	osi_circ_016429
PMCS	0.186814441

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24792219-24791097(-)
						
						Potential amino acid sequence
						
							MELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHS
TQALGYFDIPVDHIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKR
RQGHNMSEEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVM
IDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGY
FDIPVDHIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNM
SEEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRR
ASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVD
HIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSEEIAS
YLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSI
TVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQP
VILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24792219-24791097(-)
Potential amino acid sequence	MELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHS TQALGYFDIPVDHIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKR RQGHNMSEEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVM IDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGY FDIPVDHIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNM SEEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRR ASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVD HIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSEEIAS YLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSI TVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQP VILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRRQGHNMSE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0617800_circ_g.3

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