Detail information of Os06g0617800_circ_g.4


General Information
CircRNA Name Os06g0617800_circ_g.4
ID in PlantcircBase osa_circ_031382
Alias NA
Organism Oryza sativa
Position chr6: 24792119-24792367  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0617800
Parent gene annotation Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosy
l pyrophosphate synthetase 2). Splice isoform 1. (Os06t0617800-0
1);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphorib
osyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061780
0-02);Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phospho
ribosyl pyrophosphate synthetase 2). Splice isoform 1. (Os06t061
7800-03);Similar to Ribose-phosphate pyrophosphokinase. (Os06t06
17800-04);Similar to Ribose-phosphate pyrophosphokinase. (Os06t0
617800-05)
Parent gene strand -
Alternative splicing Os06g0617800_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0617800-02:1
Os06t0617800-05:1
Os06t0617800-03:1
Os06t0617800-01:1
Os06t0617800-04:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATCGGCAAAACGCTTGATGAGGAC
CTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTCctttctgtcagctctggcatacccaaag
tatggaatgacaacagtaatagacctcgccgacgcccgccgacatgcgtcgatcatgacaaaaa
gctccata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTGTCAGCTCTGGCATACCCAAAGTATGGAATGACAACAGTAATAGACCTCGCCGACGCC
CGCCGACATGCGTCGATCATGACAAAAAGCTCCATAAGGTTTTCATTAACAGGGGAGCAGGTGG
GCTGCACCAAGAACACATCGCAACCCCTCACACTCTCCTGCAGCTGCACGTAGATTTCCCCATC
GGCAAAACGCTTGATGAGGACCTTACCCAGGTCTACACCCAAGTAAGAAGCAATTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.44548996
Functional Information
Coding potential Y
Potential coding position 24792219-24792121(-)
Potential amino acid sequence MELFVMIDACRRASARSITVVIPYFGYARADRKEIASYLGVDLGKVLIKRFADGEIYVQLQESV
RGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKEIASYLGVDLGK
VLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPYFG
YARADRKEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMI
DACRRASARSITVVIPYFGYARADRK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017