Detail information of Os04g0409200_circ_igg.2


General Information
CircRNA Name Os04g0409200_circ_igg.2
ID in PlantcircBase osa_circ_023751
Alias NA
Organism Oryza sativa
Position chr4: 20241368-20242691  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0409200_circ_g.1 Os04g0409200_circ_igg.1 Os04g0409200_circ_g.3 Os04g0409200_circ_g.4
Support reads 2
Tissues shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACtctggtcatagtatctgcatttgggttc
caattgttgaagtcacctactaatgctgcagactgcaataggatgaaaatgtcatttttaattc
ttaatgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGGTCATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGC
AATAGGATGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAAT
ATATCATTTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAAT
CACGTACCTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGA
ATAATGATATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGCATTTCTGTAGTAAT
GCGACTTTAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAG
CCACCTTCATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCAC
CATGCATACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATA
TCAGAAATTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCA
CATCCTTTTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACC
TCTATTTTCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGT
CAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGG
TGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCA
GTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCT
TTATGCTTGCTTCTGCCACTGCTGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATC
ATCAGGTATCTACACAGAACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAAG
GTACATTCTTTTGTGGCAAAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACAG
CCAGCACAAGGTCACAATGCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATCA
CACATTTGGTCAGTGAATGACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCAG
GTTGCTCTTGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGG
CACCAGCACCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs osi_circ_005450* osi_circ_014333
PMCS 0.22686121
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017