Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA031663_circ_g.2 |
ID in PlantcircBase | osi_circ_002866 |
Alias | 10:17170089|17170677 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 17170089-17170677 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA031663 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA031663_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA031663-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_007186* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17170640-17170091(-) 17170599-17170336(+) |
Potential amino acid sequence |
MKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIR RKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYEVKE NFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQ EMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRD HVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERE MRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLG KGDAEKLFRDHVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDE QAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDP QGRAVNPDLGKGDAEKLFRDHVKDLYE(-) MYSLKATSLSSCFMALYLASLRKFSFTSYRSLTWSRNNFSASPLPKSGFTARPCGSFSSLGLDS VHDALGSFMISTSKA*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |