Detail information of BGIOSGA031663_circ_g.2


General Information
CircRNA Name BGIOSGA031663_circ_g.2
ID in PlantcircBase osi_circ_002866
Alias 10:17170089|17170677
Organism Oryza sativa ssp. indica
Position chr10: 17170089-17170677  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031663
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031663_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031663-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCGGATTTTAGTTCTGCTATGTACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGC
TTTGTACCTTGCATCGCTCCGGAAATTTTCTTTCACctcatacaggtccttgacatggtcacga
aataacttttctgcatcacctttacctaaatcaggatttactgcacggccttgtggatcctttt
caagtctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATACAGGTCCTTGACATGGTCACGAAATAACTTTTCTGCATCACCTTTACCTAAATCAGGA
TTTACTGCACGGCCTTGTGGATCCTTTTCAAGTCTTGGTTTGGATTCTGTCCATGATGCCTATG
CAGAAAAAATAGCATAGTTAATATGAAGTTGTACAGTACATAGCAAAATAGCTTGTCAAATGGA
GTTCAACAAAGTGTCAAGTTACCTTGGGATCTTTTATGATTTCAACAAGTAAAGCTTGATATGA
AGACACGGCCTCTTTTCTTCGGATCTTCAATTTTACTCTTTCCATTTCCTGTTCTTCCCTTTCT
TTCCTTTTCCGCATCTCGCGCTCCCTCTCCTTTAACTTGGCCTGGGTTATTACATAGTATATGT
GAAGCTACAATGCTACATTCAGTAAACAAAGCATCAGAGTACATCAGTTAAATTGACTGACTTG
TTCATCCAGTTTGGCCTTGGCAGCTTGCTCTGCTTCCTTTTCAGCGGATTTTAGTTCTGCTATG
TACTCATTAAAAGCAACCTCTCTTTCTTCGTGCTTCATGGCTTTGTACCTTGCATCGCTCCGGA
AATTTTCTTTCAC
Conservation Information
Conserved circRNAs osa_circ_007186*
PMCS
Functional Information
Coding potential Y
Potential coding position 17170640-17170091(-)
17170599-17170336(+)
Potential amino acid sequence MKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIR
RKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYEVKE
NFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQ
EMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRD
HVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERE
MRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLG
KGDAEKLFRDHVKDLYEVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDE
QAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDP
QGRAVNPDLGKGDAEKLFRDHVKDLYE(-)
MYSLKATSLSSCFMALYLASLRKFSFTSYRSLTWSRNNFSASPLPKSGFTARPCGSFSSLGLDS
VHDALGSFMISTSKA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021