Detail information of BGIOSGA009453_circ_g.2


General Information
CircRNA Name BGIOSGA009453_circ_g.2
ID in PlantcircBase osi_circ_005263
Alias 3:39938856|39941632
Organism Oryza sativa ssp. indica
Position chr3: 39938856-39941632  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009453
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009453_circ_g.1 BGIOSGA009453_circ_g.3 BGIOSGA009453_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA009453-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAAGGCCACAGAAGTGCAGCAACAATTCTTGCAGATAGCCAATTGACCATATACACAATAAA
GGATGGTTTGACGGGATTGTTCGATAGGACTGTTCCcaagttctcagctcatcatatagcaagt
tcaaaaccttatctttggctagttcgttactcccatcaagaatggacttccttttagctgttgc
tagaactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTTCTCAGCTCATCATATAGCAAGTTCAAAACCTTATCTTTGGCTAGTTCGTTACTCCCAT
CAAGAATGGACTTCCTTTTAGCTGTTGCTAGAACTTCATCATAGTTGGGAACGATAAGAGCACC
AATTCGCCGCTTGTCCTATGCAAAGAACAAACACATAAAGTTCATGATTTTGCTGGTGCACTAA
TATTTTTCATCACTCAATCTTCAAATAAAATTCCATCATAGACAATAATTAAGGTGGTCAAGGT
TACAAGTTTCAAATAATGGTGACCCAGTGATTCTACAAATTATATTTCCTTACCGATTGAAGAA
CAAATATTTACCCACATAAAGGAGCCTAAAGTGACAGATGTAATAATAACGACAATACATATGT
ATCTCTATTCTTTAGATCATCTCATACCTGGCCAACAACAACTATCTGATTAATCAAGTCACTC
CTGCTGGCTGCTTCCTCAATCTCAGCAGGTTCAACATTTTCACCTGCAAATCAGAACATTCAAG
AGCAATCAGCTCTAATTAAATATTCAAGGGCAAGAAGATCCATATATGATTTCCAACCGCACAT
AAATTCAAGTTTAATAGTGGTACATCACAGTACCATATATTCATAATCAACAATAAAAACAATA
AAATATTTTAGAAAATACATAAGGTTACATTGTGAAAAGCAGAAACCAATTACAATCTTTAACC
TGTTGTGAGAACTATTGTATCTTTTGCACGCCCTTCAAGAACAAGCATCCCTCCACACTTCCGA
CTTGGCCCTGTTGGACAGTGAGGTGCAATCCAACCAATATCCCCTGTGTCAAACCAACCTTCTT
GATCCAAAACTTTATTTGTAGCTGACGGATTCTGTGACAACAGAAATTTTAGGCGATAATATGG
AATTCCTAATAAAGTTGAATACTCAAATGGCATAACTTCATTGAGCATGGTGCCTTGACATAGA
TTATAAGATTGAACTAATTGGGTTCTCACTCTTCATTTTGGTTTGGGTGATATCCGTCAACACC
ATCTCATACTAGCTTAGTGACTCTTTTATGAGAAAAGGTATTTCCAGAATACCACAAGCCTGAC
CTTTTGTCAAATATTTTATGGAAGATATATCAGGTTGCTAAACTATGTCCAATATGAACTAGTC
AGTGCTACAACTATGATGTACCTACAGCATTACGTCTTACCAAGATATATAATCTGATGTTCAT
TTCAGCCCAATATTGTGTTCGTCTTGACCCAAACATGTTTACTGCTCAAACTTAATTTATAGTT
AAAAGCTTAATGGTATCAGTAAACTGAAAAATTTGAACCTTGTAATATCCCTTCATCACTTGGG
GTCCTCTGACTTTCACAACCCCCTTTGAACCATCTGGAAGAACCTCACCAGTCTCCATATCCAC
AACCTTGATTTCCGTGTGCTTTACTGGGTGGCCAACTGTGCCAAGAACCTGCAATGTGACAAGA
ACTACATATTTAGTGTTATCAAAGGCATTACACAGGAAATAGTATGAATAATCAAATCCATGCA
AATATGCCAGGAATACAATAGGAGCTATAATCTCACAGTATGTTGACAAACTAATGAGAAGTAT
GACGATTGTTTTCAAGACGCCATCCAGATGCAGTTCACATCAGACAAAAACGTTCATAAAGCAC
AAAAATATCATTTCTCCATTATTTTCCCCTAAAATTGAATATACACTACCACAAAAGTTGGCCC
TTCTTCATGCATTCCACAGGCCTTTTATGCATTTCACAGGCCATGTATGCTTCCAGATGAAAGC
TTACTGGTGCAGTAAGATAAAAACATTTGATAATGGGTAAATCTGCCAAGGGCAGGCTTCTAAT
AATATCATCGTTTATTGCTGAAGCAAAAATGCCCTCTGGCAAGAATTTGTTTCCACTTATGGTG
AGTAAATTTGCAACAGAATATGAAAAATATCCGGATTTACTGTTTAAGAAAAAAATGGCCTCAG
AAGAATATGCTTTCTAATACACAAAACTGTTACTTTTCTTTTCCTTTTTCTAAACACACCACAT
ATCCAAGATGGAGTTTCCTATAAAAGGTTATGAACTTCTTTATTCTGGTTGTTTTCACAGGAAT
AAGCATGTACGCAGTGGCAATACAATATCGAATATATTCTTTTCATGACAAAACCTGTGTTTGA
AAATGCTAACAATGCACACAAATAAATATCTAACCAGCATAATTCCGAGTTTGTGCGTGGGGCA
GAGAGGGGGGGGAGGGGGGGGGCGGAGAGCTCTTACGTTACAGAATGGCCGTCTAGCAGCTACA
ACAGGGGATGTCTCTGTTAGACCATAGCCATTTTGCACTTTGACACCGATGGCCTGGAAGACCA
AATTATTAATGAAGCCAATGAATATTTAACAAAATAAGTTTATTAAATGATAGACATCTACCTC
AAAAAATTTGTCAACATGCATCGGGAGACTTCCACCACCACTAATGCCAGCCTGCAAGTTACCA
CAGAATTCACCGAATATATCTGTAATCAGCATTGGTGTTAAGGAAACTCCTTTCACACTCAAGA
CTCGAACAAGGATTATCAAGGTAACACAGAAACAGGCACATGGTGTTAAGTAAAGTACCTTTGA
AATCCCAATTGCAGAATGGATTTTCTTGTAGACTAACGTCTTTGCCAGATTATGCAAAGGCCAC
AGAAGTGCAGCAACAATTCTTGCAGATAGCCAATTGACCATATACACAATAAAGGATGGTTTGA
CGGGATTGTTCGATAGGACTGTTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 39941586-39941514(-)
Potential amino acid sequence MVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKFFEAIGVKVQNG
YGLTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYK
NPSATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEE
AASRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKVLNLLYDELRTW
EQSYRTIPSNHPLLCIWSIGYLQELLLHFCGLCIIWQRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021