Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA009453_circ_g.3 |
ID in PlantcircBase | osi_circ_005264 |
Alias | 3:39938856|39941942 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 39938856-39941942 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA009453 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA009453_circ_g.1 BGIOSGA009453_circ_g.2 BGIOSGA009453_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA009453-TA:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
39941862-39938858(-) |
Potential amino acid sequence |
MEAKRIYEGTVLSNNPVKPSFIVYMVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGI SGGGSLPMHVDKFFEAIGVKVQNGYGLTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETG EVLPDGSKGVVKVRGPQVMKGYYKNPSATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLV LEGRAKDTIVLTTGENVEPAEIEEAASRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKS ILDGSNELAKDKVLNLLYDELRTCSIQRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLS NNPVKPSFIVYMVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKF FEAIGVKVQNGYGLTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKV RGPQVMKGYYKNPSATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTT GENVEPAEIEEAASRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKV LNLLYDELRTCSIQRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLSNNPVKPSFIVYMV NWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKFFEAIGVKVQNGYG LTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYKNP SATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEEAA SRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKVLNLLYDELRTCSI QRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLSNNPVKPSFIVYMVNWLSARIVAALLW PLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKFFEAIGVKVQNGYGLTETSPVVAARRP FCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYKNPSATNKVLDQEGWF DTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEEAASRSDLINQIVVVG QDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKVLNLLYDELRT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |