Detail information of BGIOSGA009453_circ_g.3


General Information
CircRNA Name BGIOSGA009453_circ_g.3
ID in PlantcircBase osi_circ_005264
Alias 3:39938856|39941942
Organism Oryza sativa ssp. indica
Position chr3: 39938856-39941942  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009453
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009453_circ_g.1 BGIOSGA009453_circ_g.2 BGIOSGA009453_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA009453-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCCTCTTTGCCTCCATATATAGCAAACTTATCTTAATAAGTGCAAGAGCAACAAATTTCCGA
GCAGTTGAACTGGAAGATATCTGTCTCTGAATTGAGcaagttctcagctcatcatatagcaagt
tcaaaaccttatctttggctagttcgttactcccatcaagaatggacttccttttagctgttgc
tagaactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTTCTCAGCTCATCATATAGCAAGTTCAAAACCTTATCTTTGGCTAGTTCGTTACTCCCAT
CAAGAATGGACTTCCTTTTAGCTGTTGCTAGAACTTCATCATAGTTGGGAACGATAAGAGCACC
AATTCGCCGCTTGTCCTATGCAAAGAACAAACACATAAAGTTCATGATTTTGCTGGTGCACTAA
TATTTTTCATCACTCAATCTTCAAATAAAATTCCATCATAGACAATAATTAAGGTGGTCAAGGT
TACAAGTTTCAAATAATGGTGACCCAGTGATTCTACAAATTATATTTCCTTACCGATTGAAGAA
CAAATATTTACCCACATAAAGGAGCCTAAAGTGACAGATGTAATAATAACGACAATACATATGT
ATCTCTATTCTTTAGATCATCTCATACCTGGCCAACAACAACTATCTGATTAATCAAGTCACTC
CTGCTGGCTGCTTCCTCAATCTCAGCAGGTTCAACATTTTCACCTGCAAATCAGAACATTCAAG
AGCAATCAGCTCTAATTAAATATTCAAGGGCAAGAAGATCCATATATGATTTCCAACCGCACAT
AAATTCAAGTTTAATAGTGGTACATCACAGTACCATATATTCATAATCAACAATAAAAACAATA
AAATATTTTAGAAAATACATAAGGTTACATTGTGAAAAGCAGAAACCAATTACAATCTTTAACC
TGTTGTGAGAACTATTGTATCTTTTGCACGCCCTTCAAGAACAAGCATCCCTCCACACTTCCGA
CTTGGCCCTGTTGGACAGTGAGGTGCAATCCAACCAATATCCCCTGTGTCAAACCAACCTTCTT
GATCCAAAACTTTATTTGTAGCTGACGGATTCTGTGACAACAGAAATTTTAGGCGATAATATGG
AATTCCTAATAAAGTTGAATACTCAAATGGCATAACTTCATTGAGCATGGTGCCTTGACATAGA
TTATAAGATTGAACTAATTGGGTTCTCACTCTTCATTTTGGTTTGGGTGATATCCGTCAACACC
ATCTCATACTAGCTTAGTGACTCTTTTATGAGAAAAGGTATTTCCAGAATACCACAAGCCTGAC
CTTTTGTCAAATATTTTATGGAAGATATATCAGGTTGCTAAACTATGTCCAATATGAACTAGTC
AGTGCTACAACTATGATGTACCTACAGCATTACGTCTTACCAAGATATATAATCTGATGTTCAT
TTCAGCCCAATATTGTGTTCGTCTTGACCCAAACATGTTTACTGCTCAAACTTAATTTATAGTT
AAAAGCTTAATGGTATCAGTAAACTGAAAAATTTGAACCTTGTAATATCCCTTCATCACTTGGG
GTCCTCTGACTTTCACAACCCCCTTTGAACCATCTGGAAGAACCTCACCAGTCTCCATATCCAC
AACCTTGATTTCCGTGTGCTTTACTGGGTGGCCAACTGTGCCAAGAACCTGCAATGTGACAAGA
ACTACATATTTAGTGTTATCAAAGGCATTACACAGGAAATAGTATGAATAATCAAATCCATGCA
AATATGCCAGGAATACAATAGGAGCTATAATCTCACAGTATGTTGACAAACTAATGAGAAGTAT
GACGATTGTTTTCAAGACGCCATCCAGATGCAGTTCACATCAGACAAAAACGTTCATAAAGCAC
AAAAATATCATTTCTCCATTATTTTCCCCTAAAATTGAATATACACTACCACAAAAGTTGGCCC
TTCTTCATGCATTCCACAGGCCTTTTATGCATTTCACAGGCCATGTATGCTTCCAGATGAAAGC
TTACTGGTGCAGTAAGATAAAAACATTTGATAATGGGTAAATCTGCCAAGGGCAGGCTTCTAAT
AATATCATCGTTTATTGCTGAAGCAAAAATGCCCTCTGGCAAGAATTTGTTTCCACTTATGGTG
AGTAAATTTGCAACAGAATATGAAAAATATCCGGATTTACTGTTTAAGAAAAAAATGGCCTCAG
AAGAATATGCTTTCTAATACACAAAACTGTTACTTTTCTTTTCCTTTTTCTAAACACACCACAT
ATCCAAGATGGAGTTTCCTATAAAAGGTTATGAACTTCTTTATTCTGGTTGTTTTCACAGGAAT
AAGCATGTACGCAGTGGCAATACAATATCGAATATATTCTTTTCATGACAAAACCTGTGTTTGA
AAATGCTAACAATGCACACAAATAAATATCTAACCAGCATAATTCCGAGTTTGTGCGTGGGGCA
GAGAGGGGGGGGAGGGGGGGGGCGGAGAGCTCTTACGTTACAGAATGGCCGTCTAGCAGCTACA
ACAGGGGATGTCTCTGTTAGACCATAGCCATTTTGCACTTTGACACCGATGGCCTGGAAGACCA
AATTATTAATGAAGCCAATGAATATTTAACAAAATAAGTTTATTAAATGATAGACATCTACCTC
AAAAAATTTGTCAACATGCATCGGGAGACTTCCACCACCACTAATGCCAGCCTGCAAGTTACCA
CAGAATTCACCGAATATATCTGTAATCAGCATTGGTGTTAAGGAAACTCCTTTCACACTCAAGA
CTCGAACAAGGATTATCAAGGTAACACAGAAACAGGCACATGGTGTTAAGTAAAGTACCTTTGA
AATCCCAATTGCAGAATGGATTTTCTTGTAGACTAACGTCTTTGCCAGATTATGCAAAGGCCAC
AGAAGTGCAGCAACAATTCTTGCAGATAGCCAATTGACCATATACACAATAAAGGATGGTTTGA
CGGGATTGTTCGATAGGACTGTTCCCTTTCCAATGGAAGAGGAGAAAAATAAGAAGAAATTTGG
ATATTAGTGGTAAAGAATCATGCTACACCTACAAATAGAATTCATGGGATAGGAATTTCTAGAT
CAAAAGGTCATCATATATGAGACAAAGGGAAGATAACATCTTTGACTATTATAATTGCAGCAAA
GAAAATGAAGTAGCTTGTGTCAGCTCAGGGTCCAGACCTCGTATATCCTCTTTGCCTCCATATA
TAGCAAACTTATCTTAATAAGTGCAAGAGCAACAAATTTCCGAGCAGTTGAACTGGAAGATATC
TGTCTCTGAATTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 39941862-39938858(-)
Potential amino acid sequence MEAKRIYEGTVLSNNPVKPSFIVYMVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGI
SGGGSLPMHVDKFFEAIGVKVQNGYGLTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETG
EVLPDGSKGVVKVRGPQVMKGYYKNPSATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLV
LEGRAKDTIVLTTGENVEPAEIEEAASRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKS
ILDGSNELAKDKVLNLLYDELRTCSIQRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLS
NNPVKPSFIVYMVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKF
FEAIGVKVQNGYGLTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKV
RGPQVMKGYYKNPSATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTT
GENVEPAEIEEAASRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKV
LNLLYDELRTCSIQRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLSNNPVKPSFIVYMV
NWLSARIVAALLWPLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKFFEAIGVKVQNGYG
LTETSPVVAARRPFCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYKNP
SATNKVLDQEGWFDTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEEAA
SRSDLINQIVVVGQDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKVLNLLYDELRTCSI
QRQISSSSTARKFVALALIKISLLYMEAKRIYEGTVLSNNPVKPSFIVYMVNWLSARIVAALLW
PLHNLAKTLVYKKIHSAIGISKAGISGGGSLPMHVDKFFEAIGVKVQNGYGLTETSPVVAARRP
FCNVLGTVGHPVKHTEIKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYKNPSATNKVLDQEGWF
DTGDIGWIAPHCPTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEEAASRSDLINQIVVVG
QDKRRIGALIVPNYDEVLATAKRKSILDGSNELAKDKVLNLLYDELRT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021