Detail information of EPlOSAG00000010309_circ_igg.20


General Information
CircRNA Name EPlOSAG00000010309_circ_igg.20
ID in PlantcircBase osa_circ_021392
Alias NA
Organism Oryza sativa
Position chr3: 29382369-29382562  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000010309_circ_igg.1 EPlOSAG00000010309_circ_igg.2 EPlOSAG00000010309_circ_igg.3 EPlOSAG00000010309_circ_igg.4 EPlOSAG00000010309_circ_igg.5 EPlOSAG00000010309_circ_igg.6 EPlOSAG00000010309_circ_igg.7 EPlOSAG00000010309_circ_igg.8 EPlOSAG00000010309_circ_igg.9 EPlOSAG00000010309_circ_igg.10 EPlOSAG00000010309_circ_igg.11 EPlOSAG00000010309_circ_igg.12 EPlOSAG00000010309_circ_igg.13 EPlOSAG00000010309_circ_igg.14 EPlOSAG00000010309_circ_igg.15 EPlOSAG00000010309_circ_igg.16 EPlOSAG00000010309_circ_igg.17 EPlOSAG00000010309_circ_igg.18 EPlOSAG00000010309_circ_igg.19 EPlOSAG00000010309_circ_igg.21 EPlOSAG00000010309_circ_igg.22 EPlOSAG00000010309_circ_igg.23 EPlOSAG00000010309_circ_igg.24 EPlOSAG00000010309_circ_igg.25 EPlOSAG00000010309_circ_igg.26 EPlOSAG00000010309_circ_igg.27 EPlOSAG00000010309_circ_igg.28 EPlOSAG00000010309_circ_igg.29 EPlOSAG00000010309_circ_igg.30 EPlOSAG00000010309_circ_igg.31 EPlOSAG00000010309_circ_igg.32 EPlOSAG00000010309_circ_igg.33 EPlOSAG00000010309_circ_igg.34 EPlOSAG00000010309_circ_igg.35 EPlOSAG00000010309_circ_igg.36 EPlOSAG00000010309_circ_igg.37 EPlOSAG00000046633_circ_ig.1 EPlOSAG00000046633_circ_ig.2 EPlOSAG00000046633_circ_ig.3 EPlOSAG00000010309_circ_g.1 EPlOSAG00000010309_circ_g.2 EPlOSAG00000010309_circ_g.3 EPlOSAG00000010309_circ_g.4 EPlOSAG00000010309_circ_g.5 EPlOSAG00000010309_circ_g.6 EPlOSAG00000010309_circ_g.7 EPlOSAG00000010309_circ_g.8 EPlOSAG00000010309_circ_g.9 EPlOSAG00000010309_circ_g.10 EPlOSAG00000010309_circ_g.11 EPlOSAG00000010309_circ_g.12 EPlOSAG00000010309_circ_g.13 EPlOSAG00000010309_circ_g.14 EPlOSAG00000010309_circ_g.15 EPlOSAG00000010309_circ_g.16 EPlOSAG00000010309_circ_g.17 EPlOSAG00000010309_circ_g.18 EPlOSAG00000010309_circ_g.19 EPlOSAG00000010309_circ_g.20 EPlOSAG00000010309_circ_g.21 EPlOSAG00000010309_circ_g.22 EPlOSAG00000010309_circ_g.23 EPlOSAG00000010309_circ_g.24 EPlOSAG00000010309_circ_g.25 EPlOSAG00000010309_circ_g.26 EPlOSAG00000010309_circ_g.27 EPlOSAG00000010309_circ_g.28 EPlOSAG00000010309_circ_g.29 EPlOSAG00000010309_circ_g.30 EPlOSAG00000010309_circ_g.31 EPlOSAG00000010309_circ_g.32 EPlOSAG00000010309_circ_g.33 EPlOSAG00000010309_circ_g.34 EPlOSAG00000010309_circ_g.35 EPlOSAG00000010309_circ_g.36 EPlOSAG00000010309_circ_g.37 EPlOSAG00000010309_circ_g.38 EPlOSAG00000010309_circ_g.39 EPlOSAG00000010309_circ_g.40 EPlOSAG00000010309_circ_g.41 EPlOSAG00000010309_circ_g.42 EPlOSAG00000010309_circ_g.43 EPlOSAG00000010309_circ_g.44 EPlOSAG00000010309_circ_g.45 EPlOSAG00000010309_circ_g.46 EPlOSAG00000010309_circ_g.47 EPlOSAG00000010309_circ_g.48 EPlOSAG00000010309_circ_g.49 EPlOSAG00000010309_circ_g.50 EPlOSAG00000010309_circ_g.51 EPlOSAG00000010309_circ_g.52 EPlOSAG00000010309_circ_g.53 EPlOSAG00000010309_circ_g.54 EPlOSAG00000010309_circ_g.55 EPlOSAG00000010309_circ_g.56 EPlOSAG00000010309_circ_g.57 EPlOSAG00000010309_circ_g.58 EPlOSAG00000010309_circ_g.59 EPlOSAG00000010309_circ_g.60 EPlOSAG00000010309_circ_g.61 EPlOSAG00000010309_circ_g.62 EPlOSAG00000010309_circ_g.63 EPlOSAG00000010309_circ_g.64 EPlOSAG00000010309_circ_g.65 EPlOSAG00000010309_circ_g.66 EPlOSAG00000010309_circ_g.67 EPlOSAG00000010309_circ_g.68 EPlOSAG00000010309_circ_g.69 EPlOSAG00000010309_circ_g.70 EPlOSAG00000010309_circ_g.71 EPlOSAG00000010309_circ_g.72 EPlOSAG00000010309_circ_g.73 EPlOSAG00000010309_circ_g.74 EPlOSAG00000010309_circ_g.75 EPlOSAG00000010309_circ_g.76 EPlOSAG00000010309_circ_g.77 EPlOSAG00000010309_circ_g.78 EPlOSAG00000010309_circ_g.79 EPlOSAG00000010309_circ_g.80 EPlOSAG00000010309_circ_g.81 EPlOSAG00000010309_circ_g.82 EPlOSAG00000010309_circ_g.83 EPlOSAG00000010309_circ_g.84 EPlOSAG00000010309_circ_g.85 EPlOSAG00000010309_circ_g.86 EPlOSAG00000010309_circ_g.87 EPlOSAG00000010309_circ_g.88 EPlOSAG00000010309_circ_g.89 EPlOSAG00000010309_circ_g.90 EPlOSAG00000010309_circ_g.91 EPlOSAG00000010309_circ_g.92 EPlOSAG00000010309_circ_g.93 EPlOSAG00000010309_circ_g.94 EPlOSAG00000010309_circ_g.95 EPlOSAG00000010309_circ_g.96 EPlOSAG00000010309_circ_g.97 EPlOSAG00000010309_circ_g.98 EPlOSAG00000010309_circ_g.99 EPlOSAG00000010309_circ_g.100 EPlOSAG00000010309_circ_g.101 EPlOSAG00000010309_circ_g.102 EPlOSAG00000010309_circ_g.103 EPlOSAG00000010309_circ_g.104 EPlOSAG00000010309_circ_g.105 EPlOSAG00000010309_circ_g.106 EPlOSAG00000010309_circ_g.107 EPlOSAG00000010309_circ_g.108 EPlOSAG00000010309_circ_g.109 EPlOSAG00000010309_circ_g.110 EPlOSAG00000010309_circ_g.111 EPlOSAG00000010309_circ_g.112 EPlOSAG00000010309_circ_g.113 EPlOSAG00000010309_circ_g.114 EPlOSAG00000010309_circ_g.115 EPlOSAG00000010309_circ_g.116 EPlOSAG00000010309_circ_g.117 EPlOSAG00000010309_circ_g.118 EPlOSAG00000010309_circ_g.119 EPlOSAG00000010309_circ_g.120 EPlOSAG00000010309_circ_g.121 EPlOSAG00000010309_circ_g.122 EPlOSAG00000010309_circ_g.123 EPlOSAG00000010309_circ_g.124 EPlOSAG00000010309_circ_g.125 EPlOSAG00000010309_circ_g.126 EPlOSAG00000010309_circ_g.127 EPlOSAG00000010309_circ_g.128 EPlOSAG00000010309_circ_g.129 EPlOSAG00000010309_circ_g.130 EPlOSAG00000010309_circ_g.131 EPlOSAG00000010309_circ_g.132 EPlOSAG00000010309_circ_g.133 EPlOSAG00000010309_circ_g.134 EPlOSAG00000010309_circ_g.135 EPlOSAG00000010309_circ_g.136 EPlOSAG00000010309_circ_g.137 EPlOSAG00000010309_circ_g.138 EPlOSAG00000010309_circ_g.139 EPlOSAG00000010309_circ_g.140 EPlOSAG00000010309_circ_g.141 EPlOSAG00000010309_circ_g.142 EPlOSAG00000010309_circ_g.143 EPlOSAG00000010309_circ_g.144 EPlOSAG00000010309_circ_g.145 EPlOSAG00000010309_circ_g.146 EPlOSAG00000010309_circ_g.147 EPlOSAG00000010309_circ_g.148 EPlOSAG00000010309_circ_g.149 EPlOSAG00000010309_circ_g.150 EPlOSAG00000010309_circ_g.151 EPlOSAG00000010309_circ_g.152 EPlOSAG00000010309_circ_g.153 EPlOSAG00000010309_circ_g.154 EPlOSAG00000010309_circ_g.155 EPlOSAG00000010309_circ_g.156 EPlOSAG00000010309_circ_g.157 EPlOSAG00000010309_circ_g.158 EPlOSAG00000010309_circ_g.159 EPlOSAG00000010309_circ_g.160 EPlOSAG00000010309_circ_g.161 EPlOSAG00000010309_circ_g.162 EPlOSAG00000010309_circ_g.163 EPlOSAG00000010309_circ_g.164 EPlOSAG00000010309_circ_g.165
Support reads 17
Tissues root
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGGCCCGCCCGTTCCAAGTTGCGTAGTTGGGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTC
ACGTTTCCCTAGAGTGGCAGGCATTGCGTGAGGagccgagctcagcagcgcgagcttgtaaccc
gagcgggggcattaaggtggtgtggacgttgccgtatggctgcgggcctgggttggcagtgcca
ta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 194
Transcript exons: 29382369-29382562
AGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACGTTGCC
GTATGGCTGCGGGCCTGGGTTGGCAGTGCCATAGATGGCCCGCCCGTTCCAAGTTGCGTAGTTG
GGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTCACGTTTCCCTAGAGTGGCAGGCATTGCGTGA
GG

Genomic sequence AGCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACGTTGCC
GTATGGCTGCGGGCCTGGGTTGGCAGTGCCATAGATGGCCCGCCCGTTCCAAGTTGCGTAGTTG
GGCCGGCGGGGCTTGAGCGAAAGCTCTGGCCTCACGTTTCCCTAGAGTGGCAGGCATTGCGTGA
GG
Conservation Information
Conserved circRNAs osi_circ_013549
PMCS 0.545365765
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016