Detail information of BGIOSGA034532_circ_igg.1


General Information
CircRNA Name BGIOSGA034532_circ_igg.1
ID in PlantcircBase osi_circ_009065
Alias Chr11:1856139_1856725(MH63RS2), Chr11:1956157_1956743(ZS97RS2), Chr11:1856139_1856725(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 1567549-1568135  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034532_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGC
TCCACTGGAGTTTGGACGCTCCTCATCTTTACTCACcttggccgcgtgttccatggtatactcg
ccgatctcagctgcctcgccaccgcagcgcagccacagggcctccatgtagctcgtgtgtgcga
aataggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCAC
AGGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTC
CCTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCCTGCAGATGCAA
TTCCGCTCCATCCAAATCATGCATCTAGCCATCTAGGTGAATAGGTGATCGAGGACTGATCAGG
AATATATGTACGTACCTCGAGGGCATCGAGGTCAACTAGGGCGCGGGGGGACACGGCGTAGAGC
TCGCCAGAGACGAGATGGCTACCGGAGGATGAACTTGGCCTGGGGAGGAGGAACGGAACAGAGT
AGGGCCCCACAACAAGCGAGGCCGGGGTGGCGGTGGAGGCAGCACCAACCAAGGGGGAACCGGA
GGCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCTTCAGGGTGCCGTACACGAACACCATTGTC
GCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGTTTGGACGCTCCTCA
TCTTTACTCAC
Conservation Information
Conserved circRNAs osa_circ_008414
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021