Detail information of Os11g0139900_circ_g.2


General Information
CircRNA Name Os11g0139900_circ_g.2
ID in PlantcircBase osa_circ_008414
Alias Os11circ00243/Os_ciR543
Organism Oryza sativa
Position chr11: 1842847-1843432  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method SMALT, Segemehl, circseq_cup, find_circ
Parent gene Os11g0139900
Parent gene annotation Mitochondrial glycoprotein domain containing protein. (Os11t0139
900-00)
Parent gene strand -
Alternative splicing Os11g0139900_circ_g.3
Support reads 6/74/24
Tissues leaf and panicle/root/root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os11t0139900-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGC
TCCACTGGAGTTTGGACGCTCCTCATCTTTACTCACttggccgcgtgttccatggtatactcgc
cgatctcagctgcctcgccaccgcagcgcagccacagggcctccatgtagctcgtgtgtgcgaa
ataggcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 217
Transcript exons: 1842847-1842881,1843251-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCCCGGGGTGGCGGTGGAGGCAGCACCAACC
AAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCTTCAGGGTGCCGTACA
CGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGT
TTGGACGCTCCTCATCTTTACTCAC

Transcript length: 228
Transcript exons: 1842847-1843026,1843385-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCCCTCAATTTCTGC
TCCACTGGAGTTTGGACGCTCCTCATCTTTACTCAC

Transcript length: 279
Transcript exons: 1842847-1842960,1843251-1843351,1843369-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCCCGGGGTGGCGGTG
GAGGCAGCACCAACCAAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCT
TCAGGGTGCCGTACACGAACACCTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGTTT
GGACGCTCCTCATCTTTACTCAC

Transcript length: 288
Transcript exons: 1842847-1843023,1843322-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCACGCTTCAGGGTG
CCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCA
CTGGAGTTTGGACGCTCCTCATCTTTACTCAC

Transcript length: 290
Transcript exons: 1842847-1842949,1843236-1843353,1843364-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCACAACAAGCGAGGCCGGGGTGGC
GGTGGAGGCAGCACCAACCAAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAACCA
CGCTTCAGGGTGCCGTACACGAACACCATTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTC
CACTGGAGTTTGGACGCTCCTCATCTTTACTCAC

Transcript length: 302
Transcript exons: 1842847-1842998,1843283-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAAC
CACGCTTCAGGGTGCCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCT
CAATTTCTGCTCCACTGGAGTTTGGACGCTCCTCATCTTTACTCAC

Transcript length: 341
Transcript exons: 1842847-1843002,1843236-1843336,1843349-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGCCGCCCACAACAAGCGAGGCCGGGGTGGCGGTGGAGGCAG
CACCAACCAAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCTTCAGGGT
GACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGTTTGG
ACGCTCCTCATCTTTACTCAC

Transcript length: 495
Transcript exons: 1842847-1843432
TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCCTCGAGGGCATCG
AGGTCAACTAGGGCGCGGGGGGACACGGCGTAGAGCTCGCCGGAGACGAGATGGCTACCGGAGG
ATGAACTTGGCCTGGGGAGGAGGAACGGAACAGAGTAGGGCCCCACAACAAGCGAGGCCGGGGT
GGCGGTGGAGGCAGCACCAACCAAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAA
CCACGCTTCAGGGTGCCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGC
TCAATTTCTGCTCCACTGGAGTTTGGACGCTCCTCATCTTTACTCAC

Genomic sequence TTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACA
GGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCC
CTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCCTGCAGATGCAAT
TCCGCTCCATCCAAATCATGCATCTAGCCATCTAGGTGAATAGGTGATCGAGGACTGATCAGGA
ATATATGTACGTACCTCGAGGGCATCGAGGTCAACTAGGGCGCGGGGGGACACGGCGTAGAGCT
CGCCGGAGACGAGATGGCTACCGGAGGATGAACTTGGCCTGGGGAGGAGGAACGGAACAGAGTA
GGGCCCCACAACAAGCGAGGCCGGGGTGGCGGTGGAGGCAGCACCAACCAAGGGGGAACCGGAG
GCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCTTCAGGGTGCCGTACACGAACACCATTGTCG
CCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGTTTGGACGCTCCTCAT
CTTTACTCAC
Conservation Information
Conserved circRNAs osi_circ_003000* osi_circ_009065
PMCS 0.456582907
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA