Detail information of Os10g0462900_circ_g.9


General Information
CircRNA Name Os10g0462900_circ_g.9
ID in PlantcircBase osa_circ_007028
Alias NA
Organism Oryza sativa
Position chr10: 17049013-17052246  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0462900
Parent gene annotation Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila
r to mitochondrial chaperonin-60. (Os10t0462900-02)
Parent gene strand +
Alternative splicing Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.10 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.18 Os10g0462900_circ_g.19
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0462900-02:12
Os10t0462900-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATG
CCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgttggaagcaggcttgccttgagcagga
actatgctgccaaggatatcaagtttggagttgaggcccgtgctttgatgctgaggggtgttga
ggagttgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1270
Transcript exons: 17049013-17049144,17049448-17049607,17050180-17050355,17
050448-17050543,17050677-17050781,17050864-17050950,1705
1040-17051129,17051199-17051279,17051366-17051434,170515
79-17051656,17051744-17051839,17052147-17052246
GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGG
CCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGGCAGATGCAGTCAAAGTGACAATGGGTCC
TAAGGGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTG
ACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGC
AGGTTGCTAATGCGACCAATGATACTGCTGGAGATGGTACCACTTGTGCTACTGTATTGACTAA
AGCAATATTTACTGAGGGGTGCAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGT
GGTATTTCAATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCA
CATCAGAGGAAATAGCTCAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCT
TATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGGATGGTAACACC
CTTTACAATGAGCTTGAAGTTGTGGAAGGCATGAAACTTGACAGAGGCTACATCTCTCCTTACT
TTGTTACCAACCCAAAGACCCAGAAATGTGAACTGGATGACCCCTTGATCCTGATACATGACAA
GAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGAAGCAAAGGCCT
CTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTC
GTGCAGGCATCAAGGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTT
ACAGGACCTTGCGATCCTTACTGGAGGAGAAGTCATAACTGAAGAGCTAGGAATGAATCTTGAG
AAGTTCGAGCCTCAGATGTTGGGTACATGCAAGAAGGTAACTGTATCTAAGGACGACACTGTTA
TTCTTGATGGAGCTGGAGACAAGAAATCCATTGAAGAGAGGGCTGAGCAGATTAGATCTGCAAT
TGAGCTAAGCACTTCTGATTATGACAAGGAAAAGCTACAGGAGCGGTTGGCAAAGCTCTCCGGA
GGTGTTGCTGTTCTAAAGATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAG
TGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG

Genomic sequence GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGG
CCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGGCAGATGCAGTCAAAGTGACAATGGGTCC
TAAGGTATAATTGTGTTCATGTAAATGTGTCATTGTGCACTTGTGTACTTGTCTGAATACGTTA
ATTGTTTTGTAGCTATTATAAATGAAGTTCCTTTGATAGAAAGCCAAATGATTGGTTTATGATT
CTGAAAATAACTGTCATAAACATGGTGCACCTTTTCTCTGATGACAAAATTAGTCTTTATGTCA
TGCTTTCATTGTTGCAGCACAGTGTTTGTTGGGCCTACAACTTTTTATGTTTTTATTTTGTCAG
AGTGCTGTGTTGTGTTATTTGCAGATTGGACTTAACGTGTCTATTATGCAGGGACGCAATGTGG
TTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTGACTGTTGCCAAGAGCAT
TGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGTTGCTAATGCGACC
AATGATACTGCTGGAGATGGTATGGCTGTACTTGTACCATTCTGTTGAGAATACTTGGTCCTTC
TGTTAGCATTCTACAACTTTGGTTATATATTATAAACAATTCCAGACCATCTCATGTTTTGCCT
TCCTGTAATATTTAACCTGTAACTTATATTTACAAATATGTTCATTATTTGCATTTTTGCATAA
AGTAATTCACTGTATTTAATTTATTGTTGGACGAAGGTTTGAGTGTATGCAGTTCTTATCTTCA
TTGTATTCATAGGTGTGAGTTTTGGCATTGTAATTTATTGTTGTTTGGGCATTTTCAATCATCT
ATCAATGCTACCTTGAATTATAATGCTATATAGTACCACTGGTTTTTGATAGATGTCACGGTTG
ACTTTTTTATACACAATTTGTTTTGTTAAAAAACGAAAATTATTATTCATTTTGTTGTGACTTG
GTTTATCATCAAAGGTAGTATAAGCATGACTTACATTTTCACATATTTGCACAAATTCAATATG
TGGATTGCATTGTACTTTAGGATTTGCTTAGTTGCATAATTTGTTTGTTCTAACTGTGTTATTC
TGATCCAAAATTCAGGTACCACTTGTGCTACTGTATTGACTAAAGCAATATTTACTGAGGGGTG
CAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGTGGTATTTCAATGGCTGTTGAT
GCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGG
TAATACTTGTGATTCATTGCAGATCTCATTATGTGTTTGACTTGTTTCTTAATCTTAATCTGTT
ACTAAGTTCTTATGTTCATATATAAAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTG
GTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGGTAAG
TTGATCCAAGTTAAAACTGAACTTGGCCTCTCTTATCTCTATTTGGTTGGTAGACTTCCTTTAG
TTAAAACTGAACTTGTGCCAACACTCTGGTTTTTCGTTAATTTGTTTGCTTAAACATTTGGTAG
GATGGTAACACCCTTTACAATGAGCTTGAAGTTGTGGAAGGCATGAAACTTGACAGAGGCTACA
TCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTGTAAGTTTTTAACTTCTGTTGTT
GGTTGATATGTTCAGTTTTTCTTTTGGAACTATCTAAGTCATGAGGTTATATTTAACAGGAACT
GGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTC
TTGGAGTTGGCTCTGAAGGTATGTGTTTGCTTTCATAAAATAGTTGTATATTGTGGTGGTGCTA
CTGATTTTCTTGCTATAACTGGTCAACATCTTGCCTTGCACAGAAGCAAAGGCCTCTGCTGATT
GTTGCTGAAGATGTAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCA
TCAAGGTCAGTAAATACTGGGCATTTGTGATTTGAATCTGTGTAGTTGTCCTAAATGAGGGATG
TGTTGTTCAGGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAG
GACCTTGCGATCCTTACTGGAGGAGAAGTAAGTTTAACAATCACCTCTCCAAGTTGGTGCATAT
AAATTTAACCAATTGAATGCATTATAACCTGTTTATTTTAATGATTCAGGTCATAACTGAAGAG
CTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGTTGGGTACATGCAAGAAGGTATGAATGA
TTCCTAGAAGGCTGGTAGATAAGCTTTGGCTATCTTTGGAAAGAAATTTGTTTGAAGTGTATCT
TTTGTCCGCTAACATTTAAGATGATACCAGTCTGTTCTGATGGTTGAGTGATATTCCATGTCCA
TTACAGGTAACTGTATCTAAGGACGACACTGTTATTCTTGATGGAGCTGGAGACAAGAAATCCA
TTGAAGAGAGGGCTGAGCAGGTTCGTACAACATTAATTCATTGCGTTACTAGTGCATTATTTTG
AAAATCGTGGTTGTTGATAGATTATATAAATGCTGTGTTGCAGATTAGATCTGCAATTGAGCTA
AGCACTTCTGATTATGACAAGGAAAAGCTACAGGAGCGGTTGGCAAAGCTCTCCGGAGGTGTTG
CTGTTCTAAAGGTGAGGTTCACAATATTATGTTTATATTGAGGAATATATATTGAATGAAATAA
CAAACTTTCCGAACATTCCATGGTTAGATAAACCATCTGAAAGAGCCAATGTTAGACAGAATAC
CAGATATGTTACTGTGTAGCCACCTAGTGTTGATTCTATTATATTGATGGTAAAAGCTTGTGAA
GTCTCATTAGAGACCTCACACTTGTAACACACAATGATGTTGAGAATGGAAGTTGAATTGCACT
GCTAGGAGTGGTGCCCTGAAGTTATATTTTGACCTGTATATGCATCATGACCTTTCCTACAGAT
CGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCC
ACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG
Conservation Information
Conserved circRNAs osi_circ_008483
PMCS 0.345037157
Functional Information
Coding potential Y
Potential coding position 17049089-17049071(+)
17052209-17049071(+)
Potential amino acid sequence MLRGVEELADAVKVTMGPKGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVAN
ATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEE
IAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTN
PKTQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGI
KVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDG
AGDKKSIEERAEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDA
LNATKAAVEEGIVPGWKQACLEQELCCQGYQVWS*(+)
MPLKLLWKRVLYQVGSRLALSRNYAAKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNVVIE
QSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCK
SVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKV
GKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPKTQKCELDDPLILIHDKKVSNLHAV
VKVLELALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTG
GEVITEELGMNLEKFEPQMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIELSTSDYD
KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGWKQACLEQELC
CQGYQVWS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017