Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06220_circ_g.1 |
ID in PlantcircBase | ath_circ_000952 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 1903041-1903873 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G06220 |
Parent gene annotation |
110 kDa U5 small nuclear ribonucleoprotein component CLO |
Parent gene strand | + |
Alternative splicing | AT1G06220_circ_g.2 AT1G06220_circ_g.3 |
Support reads | 14 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G06220.1:4 AT1G06220.2:4 AT1G06220.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.2083499 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1903370-1903870(+) |
Potential amino acid sequence |
MMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLM ATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKIAEPLDRGLAEDIE NGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDS IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLME PVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKIAEPLDRGLAEDIENGVVSID WNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQW GAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEI QTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKIAEPLDRGLAEDIENGVVSIDWNRKQLG DFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPL CDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCV TAIYTVLSRRRGHVTSDVPQPGTPAYIVK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |