Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06220_circ_g.2 |
ID in PlantcircBase | ath_circ_000953 |
Alias | At_ciR5918 |
Organism | Arabidpsis thaliana |
Position | chr1: 1903316-1903684 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI-full |
Parent gene | AT1G06220 |
Parent gene annotation |
110 kDa U5 small nuclear ribonucleoprotein component CLO |
Parent gene strand | + |
Alternative splicing | AT1G06220_circ_g.1 AT1G06220_circ_g.3 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G06220.1:2 AT1G06220.2:2 AT1G06220.3:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.23246836 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1903370-1903681(+) |
Potential amino acid sequence |
MMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLM ATPRLMEPVYYVEGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKI VDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEGPNILLDDTLPTEVDRNLMM AVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMAT PRLMEPVYYVEGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVD ARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |