Detail information of BGIOSGA016049_circ_igg.9


General Information
CircRNA Name BGIOSGA016049_circ_igg.9
ID in PlantcircBase osi_circ_015173
Alias Chr04:11506061_11510956(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 9608755-9613652  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016047_circ_g.1 BGIOSGA016047_circ_igg.1 BGIOSGA016047_circ_ag.1 BGIOSGA016048_circ_igg.1 BGIOSGA016049_circ_igg.1 BGIOSGA016047_circ_ig.1 BGIOSGA016048_circ_igg.2 BGIOSGA016049_circ_igg.3 BGIOSGA016047_circ_ig.4 BGIOSGA016048_circ_igg.5 BGIOSGA016049_circ_igg.6 BGIOSGA016047_circ_ig.7 BGIOSGA016049_circ_igg.8 BGIOSGA016049_circ_igg.10 BGIOSGA016048_circ_ig.1 BGIOSGA016049_circ_igg.2 BGIOSGA016049_circ_igg.3 BGIOSGA016048_circ_ig.4 BGIOSGA016049_circ_igg.5 BGIOSGA016049_circ_igg.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGGCTAACCATGCTAAACTTTATTAGTGACAAGGAGGACAGTGACCTAGCAAGATCCAAACT
TGTCAGGGCAAGGCTACTTGTCAATGATTCAATCAGgcaactccagtgagcacagctgcgtatg
aagaacaaagctgactgaggtggttctgagcgctcctttgaggtaggcataatggttttcctga
aactccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAACTCCAGTGAGCACAGCTGCGTATGAAGAACAAAGCTGACTGAGGTGGTTCTGAGCGCTCC
TTTGAGGTAGGCATAATGGTTTTCCTGAAACTCCAACCATATGCAGAGTCCTCAGTGATAAATC
GTCCATATCCTAAACTGGCATTCAATTTTTTTGGTCCCTTCCGAGTTGTGGAGAAGGTTGGCTC
TACAGCTTATCGCTTGGAATTGCCTGAAAGCAGTAGTGTGTGCATCCGGTGTTCCATGTTTCTC
AACTAAAAGCCCATGTTCATGATCACACTCCAGTGTTTTCATCACTGCCTTCTCCAGTTGTGCT
CGATGCTGCAGATGTCTGGTCTGAGGAAATCCTGGATCGCTGCCTGGTAAAAAAAAAAGAGGAA
ATGCTGCACATGTGCAAGTTCTGATTAAATGGTCTTCGTTGCCTACTGATCATGCCACATGGCA
AGATTATGAAGTCCTTAAGCATCGGTTTCCTTTTGCACCAGCTTGGGGGCAAGCTGTGTCTCCG
GAGGGCGGTACTGTCACAGCTGGTGATACGCTACAGTAGATAGTGCCAGATATGCAACACTTGG
CGTTTTGTGCGTGCGTGAATTGAGCCTGCGAGTTCGTTTGAGTTGTTGAGCCTGTGTGCTCGCG
TCACGTGACTAGCTATTAGGCCTATATAATTGGGACCACATCAAGGGGAAGTGATTATGAAAAT
GAATAGAGAAAACTAAATCTATCTCCATCTCTGTTTCTCTTCTGTTCTTCTCTGTTCTTCTTTT
CTCTGCTGCTTCTCTCTATCTTCGGATCTCTCTGCGATTCCAATCTATTACAACACGGCGGCAG
CAGGTGTGCGGCTAGTAGTTCTGGGCTGGGGACCCATGTCACAGGTGCCCAGGGAGCACAGCTG
GGCATGGGTAAGGTGAGCCTAGCCTAGCTGTCTAGGCATGGTGTGTACTGGGCCAGGCTGATGA
GAGAGGATAGATTTGGTCTGGAGGAGGAAGGAGGGAAAGAAACAAAAAGGAAGGGGTTTCTTAA
CAATCAGGGTGACATTGGTTAACAAGGTAGTTTACAGAACCAGTAGAGTAGCGTTATGAATTGG
TGTTAATAAAGTCAAAATGATATTAAGTCCTGTTCAGGAGCTAAAGTGAGTTGTTTGTTAGGAT
TAGTCCTAAAAGTGCAAATTTTGTATCACCGTTCAGATTAGAGGTCAAATCCATGTTACTGAGG
AAGCCACACATCCATTATGCAAGGATGCTGGTATTTCATGAGGCAAATACTAAGAAGTATTTCT
ATCCTCAACCCCTCTAGTTCTCTCAGATCAAGCTCCACATTAGACTTATGAATTATGTATGACA
AATGAAGATCACAGCAAAATAATCTCAGAAAATTTCCATTCTAGTTTATTCGAAAGTAGCACAT
TTTGTTGTTTGATAGTTGGTACTTATTTGATACTTTATATCAGGAGTTGATAAAGTCAAATCGA
TTTGCTGAAGCTGAAAATTGGCAAAGGAAGATATTACATAATCTGGAACTCTCAAAGGCATGTC
GATATGTCTTCTTGCTTTTGTACTATTGCTTCATTATTTGTTCTGGTGATAGCACTGCTTATGC
GAATTTGGTCATTGTCATGATGCATGCCTTAAAAAACGAGCTTGAGTTAATCTATATCTTCAGA
TATTAAATTGATTTTTGGTTGTATTTTTGTTTCTAAATACAATTGTTCTAGTGTTTTTTGCACT
TGCATCCTGTCTAGCAAGGCAAGAGAATGATGTTCTCACGATCTAGGTTGTGCTCTAGTTCAGG
TGTATTAATGCAGATGAGGGCAATAAAGTCTTGCTTCAGCTATTCATGGTCAATAGATAGCCTG
AAATATAGGAAAATAGTAATCAGAACTAAGTAGACGATTGAATGGCCGAAGTAATTGCTTGCTG
GTCAAAGTACATGTTTAGTGTTTTCCTATATGTACTTATATTCTACTCCCTCTGTTTGAAAATA
TAAGGCATCCTTGTTTTCCTCAAAGTCAATATTTAAATTTTTGACTAATTATTAAACTAGAAGT
ATACGTGTTTAGACCACTAGATTCGTTTTTGAATATATTTTCACATGATGTTAATTTTATAGTT
AGTGACAATATATTATTATAGTCAAAGTGTAATGTTGGAGACCATGTAGAAACCTAATATGCCT
TATATTTTCAAACCAGGGGAGTATTTTAAAAGTGTAGCTTATCCATCTACCCCTCTCACCTATA
GGGACACTTCCTTGATCCACTTATCTGATAAACTTTTATGAGCTTATGTGTCAAGGATTAGATT
TGTTAGTATCTCTACTTCCATATTAAAGACAAGTTTCTTATGGCATGTACAACGGTGTTCATTA
CGGGCTCTTTCCGTTGCTATGCAAGTAAATTTGGTGACATGTAAGAGAGAGGGAGGAAAGGGAA
ACATTGTTGCTATGCATAACAGCTCGGAGTCGACTCTTAGCATTTATTAAAGGAAAATTTGCTG
CATGTGTTTGGAGAAAAGGAAAGAAGGGCAATAAAAAATATTTTGGTGTATTAATGGTTAAGAG
GTCTTGTTGTCTCAACTATTGTTGGAGGATAATCTCTAAGTGATATGTATTAACTAAGAGCGAC
TCTACCTTTGTACATACCCTTATGGGTCAAGTTAGCCTAGCTATATAAGGATGGAGTTGTATCT
TCACCCTGGAAAGAACAAACCAAGCCAACCACCTCAGCCATGTTCCAGTAATACTGTATTCTTA
GCAACCGATGGAAATATTGTCCCTATCCCCTCTCCCTGTAGTAGTTTATTTTTGTATGCACCAT
AGTCCACGGTAAACTGAAAACGGTAAACTGAAAAGGGGATTAACACAAATATTCCAGCAATATC
AGGCTCGGTCATAATGAGTCTATTAATGGACCATGCTAACCTTATATGTCATATTCTTTTAATG
AACAACCTCTTAAGTCTTTATCAAATCTTATCATGAATCATCCAATTTTTTTACAAAACCTATC
AATGTTCGTCTTTGCAATTGTTTGATAGGGGTGGGATTCATTGGACACTACGAATGCAGCTGAA
CTCTTAACAATGACTCTTCAAACCATGGGGAAGTTGAAGGAATCTGAAGAATTATTGGAAAGGT
GGAGCGTAAAAGCTGTTTATTTTGGCCATTGATTGTTTTTTAAATTTCTTACTAACATAATTTT
ATTTTTTGTATTATATTTAGATGCCTTGAAGTCAGAAAAAGGATTTTGTCTGAGGAACATTTTC
AGGTTTGTATCATATTTAATGTTTCATGTGATCTTTAGTGGAAATAAAACATGAAAGCATCATC
TCAATGAAAAACTCACGAGCTTTCTTACATGATCACAATTCTCTTGTTTCTTAAAATTATGGTT
GCCAGATCACTTACCAGGTATTTGAGTTTTTCACCACAAGCTCTGCTTTATTGGCAATTAGCAC
AGACTGGGAGGTATTTGTGCCATGTGCCCCTGCCACGATGCTTGATTGGGAAGCAATGTAATCA
CTGTTGCTCCATATGTATTTTACTAGGTCATGGTGGCATCGCCAATTCATGTTGATTATCACCA
TTTCCATAGTTTGATGATTACATGATTAGATTGCTTCATTAGTGTTTCACTTCCTTGGTGCATG
CTGTGTCCTGAGAAGCTGAGCCCAAGAAATGCAAATGTTTTGTTGAAAAATGTAGGACTCCCTT
GCTTTAGGTAGAGTATTGTCCATATCACCAATGGCAATTGTCATTGTTGACTGATGGTTGCGGC
AGCTACGGCACACACAAGACCATGTGACCTGCATCTGCTATGTTGAGTTCACGGTGCACCCCTA
CATGTCAGGTGATACAGCAAAATGCCTAGTGGTGGGGAACTGGGGACTCTAGTGGCAAACTGGC
AATCAAAACTAATACTCTAATAGTAGCATTATGATGCTATGATCCTCAAATATTTGGATCAATC
TAATGAAAATAATAATTACCATATAGATACCCTTCAGTCACAAATAAGTGTTGTTTTAGAATCC
ATGCGACATAATTATTACTACATCCGTTCCAGAATATAAGAAGTTTTAGTGTTAGACACGGTTA
TTAAGAAAGTAAGTAGAATTAAATGGAGAGGTTGTGATTGGTTGAGAAGTGGAGGTAGGTGTAG
AAATTGAATGGTGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGATGGAGAAGTTGTAATATT
TTTGGACAAAATTCTTAGTGCTAGAAGTTGTTATATTTTGAGACAGAGGGATTATTGTTTAGAA
TATAGATCTGGGTATATGAAAATAACATGGCCAAATTCGTTATATCAAAAAAGCTTTCATAATG
TCACGCTTCTGCAACTCATTTTGGATTTATGCTTTCATAATGTCACGCTTCTGCAACTCATTTT
GGATTTATGGAATTGAATTAAATGGTCAAAGTTATGTCTTATTGGCTTTTGGCTTTGAAAAGTC
GACACTTATTTGTGACTGGAGGGAGTACAGTTTAGTCTTCCACAAATATGTTATTGCGAGATGT
ACTGTTGAAGGTGCATCCCTGGAATCATGAAAAGTCAATAACACCGAGAATTGGGTTTTCCTGC
CGTTTCATATACAATCAATTTAATACTGGTTGTCACTAGCAACTAGCTGGAACCTAGTCCACTT
GGTGGGTTCTAACTGGGTATTGCGACTACTTAACACAGTTTTTGAAATGATTCCATCTCCAGTG
GACAGTGATTGATTTCCTGTTGTTCCTAATGTTACAGGTAGCTGTTACTTTGGTACACTTGGCA
AGGCTAACCATGCTAAACTTTATTAGTGACAAGGAGGACAGTGACCTAGCAAGATCCAAACTTG
TCAGGGCAAGGCTACTTGTCAATGATTCAATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021