Detail information of BGIOSGA016049_circ_igg.8


General Information
CircRNA Name BGIOSGA016049_circ_igg.8
ID in PlantcircBase osi_circ_005353
Alias 4:9608753|9613652
Organism Oryza sativa ssp. indica
Position chr4: 9608753-9613652  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016047_circ_g.1 BGIOSGA016047_circ_igg.1 BGIOSGA016047_circ_ag.1 BGIOSGA016048_circ_igg.1 BGIOSGA016049_circ_igg.1 BGIOSGA016047_circ_ig.1 BGIOSGA016048_circ_igg.2 BGIOSGA016049_circ_igg.3 BGIOSGA016047_circ_ig.4 BGIOSGA016048_circ_igg.5 BGIOSGA016049_circ_igg.6 BGIOSGA016047_circ_ig.7 BGIOSGA016049_circ_igg.9 BGIOSGA016049_circ_igg.10 BGIOSGA016048_circ_ig.1 BGIOSGA016049_circ_igg.2 BGIOSGA016049_circ_igg.3 BGIOSGA016048_circ_ig.4 BGIOSGA016049_circ_igg.5 BGIOSGA016049_circ_igg.6
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGGCTAACCATGCTAAACTTTATTAGTGACAAGGAGGACAGTGACCTAGCAAGATCCAAACT
TGTCAGGGCAAGGCTACTTGTCAATGATTCAATCAGcagcaactccagtgagcacagctgcgta
tgaagaacaaagctgactgaggtggttctgagcgctcctttgaggtaggcataatggttttcct
gaaactcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCAACTCCAGTGAGCACAGCTGCGTATGAAGAACAAAGCTGACTGAGGTGGTTCTGAGCGCT
CCTTTGAGGTAGGCATAATGGTTTTCCTGAAACTCCAACCATATGCAGAGTCCTCAGTGATAAA
TCGTCCATATCCTAAACTGGCATTCAATTTTTTTGGTCCCTTCCGAGTTGTGGAGAAGGTTGGC
TCTACAGCTTATCGCTTGGAATTGCCTGAAAGCAGTAGTGTGTGCATCCGGTGTTCCATGTTTC
TCAACTAAAAGCCCATGTTCATGATCACACTCCAGTGTTTTCATCACTGCCTTCTCCAGTTGTG
CTCGATGCTGCAGATGTCTGGTCTGAGGAAATCCTGGATCGCTGCCTGGTAAAAAAAAAAGAGG
AAATGCTGCACATGTGCAAGTTCTGATTAAATGGTCTTCGTTGCCTACTGATCATGCCACATGG
CAAGATTATGAAGTCCTTAAGCATCGGTTTCCTTTTGCACCAGCTTGGGGGCAAGCTGTGTCTC
CGGAGGGCGGTACTGTCACAGCTGGTGATACGCTACAGTAGATAGTGCCAGATATGCAACACTT
GGCGTTTTGTGCGTGCGTGAATTGAGCCTGCGAGTTCGTTTGAGTTGTTGAGCCTGTGTGCTCG
CGTCACGTGACTAGCTATTAGGCCTATATAATTGGGACCACATCAAGGGGAAGTGATTATGAAA
ATGAATAGAGAAAACTAAATCTATCTCCATCTCTGTTTCTCTTCTGTTCTTCTCTGTTCTTCTT
TTCTCTGCTGCTTCTCTCTATCTTCGGATCTCTCTGCGATTCCAATCTATTACAACACGGCGGC
AGCAGGTGTGCGGCTAGTAGTTCTGGGCTGGGGACCCATGTCACAGGTGCCCAGGGAGCACAGC
TGGGCATGGGTAAGGTGAGCCTAGCCTAGCTGTCTAGGCATGGTGTGTACTGGGCCAGGCTGAT
GAGAGAGGATAGATTTGGTCTGGAGGAGGAAGGAGGGAAAGAAACAAAAAGGAAGGGGTTTCTT
AACAATCAGGGTGACATTGGTTAACAAGGTAGTTTACAGAACCAGTAGAGTAGCGTTATGAATT
GGTGTTAATAAAGTCAAAATGATATTAAGTCCTGTTCAGGAGCTAAAGTGAGTTGTTTGTTAGG
ATTAGTCCTAAAAGTGCAAATTTTGTATCACCGTTCAGATTAGAGGTCAAATCCATGTTACTGA
GGAAGCCACACATCCATTATGCAAGGATGCTGGTATTTCATGAGGCAAATACTAAGAAGTATTT
CTATCCTCAACCCCTCTAGTTCTCTCAGATCAAGCTCCACATTAGACTTATGAATTATGTATGA
CAAATGAAGATCACAGCAAAATAATCTCAGAAAATTTCCATTCTAGTTTATTCGAAAGTAGCAC
ATTTTGTTGTTTGATAGTTGGTACTTATTTGATACTTTATATCAGGAGTTGATAAAGTCAAATC
GATTTGCTGAAGCTGAAAATTGGCAAAGGAAGATATTACATAATCTGGAACTCTCAAAGGCATG
TCGATATGTCTTCTTGCTTTTGTACTATTGCTTCATTATTTGTTCTGGTGATAGCACTGCTTAT
GCGAATTTGGTCATTGTCATGATGCATGCCTTAAAAAACGAGCTTGAGTTAATCTATATCTTCA
GATATTAAATTGATTTTTGGTTGTATTTTTGTTTCTAAATACAATTGTTCTAGTGTTTTTTGCA
CTTGCATCCTGTCTAGCAAGGCAAGAGAATGATGTTCTCACGATCTAGGTTGTGCTCTAGTTCA
GGTGTATTAATGCAGATGAGGGCAATAAAGTCTTGCTTCAGCTATTCATGGTCAATAGATAGCC
TGAAATATAGGAAAATAGTAATCAGAACTAAGTAGACGATTGAATGGCCGAAGTAATTGCTTGC
TGGTCAAAGTACATGTTTAGTGTTTTCCTATATGTACTTATATTCTACTCCCTCTGTTTGAAAA
TATAAGGCATCCTTGTTTTCCTCAAAGTCAATATTTAAATTTTTGACTAATTATTAAACTAGAA
GTATACGTGTTTAGACCACTAGATTCGTTTTTGAATATATTTTCACATGATGTTAATTTTATAG
TTAGTGACAATATATTATTATAGTCAAAGTGTAATGTTGGAGACCATGTAGAAACCTAATATGC
CTTATATTTTCAAACCAGGGGAGTATTTTAAAAGTGTAGCTTATCCATCTACCCCTCTCACCTA
TAGGGACACTTCCTTGATCCACTTATCTGATAAACTTTTATGAGCTTATGTGTCAAGGATTAGA
TTTGTTAGTATCTCTACTTCCATATTAAAGACAAGTTTCTTATGGCATGTACAACGGTGTTCAT
TACGGGCTCTTTCCGTTGCTATGCAAGTAAATTTGGTGACATGTAAGAGAGAGGGAGGAAAGGG
AAACATTGTTGCTATGCATAACAGCTCGGAGTCGACTCTTAGCATTTATTAAAGGAAAATTTGC
TGCATGTGTTTGGAGAAAAGGAAAGAAGGGCAATAAAAAATATTTTGGTGTATTAATGGTTAAG
AGGTCTTGTTGTCTCAACTATTGTTGGAGGATAATCTCTAAGTGATATGTATTAACTAAGAGCG
ACTCTACCTTTGTACATACCCTTATGGGTCAAGTTAGCCTAGCTATATAAGGATGGAGTTGTAT
CTTCACCCTGGAAAGAACAAACCAAGCCAACCACCTCAGCCATGTTCCAGTAATACTGTATTCT
TAGCAACCGATGGAAATATTGTCCCTATCCCCTCTCCCTGTAGTAGTTTATTTTTGTATGCACC
ATAGTCCACGGTAAACTGAAAACGGTAAACTGAAAAGGGGATTAACACAAATATTCCAGCAATA
TCAGGCTCGGTCATAATGAGTCTATTAATGGACCATGCTAACCTTATATGTCATATTCTTTTAA
TGAACAACCTCTTAAGTCTTTATCAAATCTTATCATGAATCATCCAATTTTTTTACAAAACCTA
TCAATGTTCGTCTTTGCAATTGTTTGATAGGGGTGGGATTCATTGGACACTACGAATGCAGCTG
AACTCTTAACAATGACTCTTCAAACCATGGGGAAGTTGAAGGAATCTGAAGAATTATTGGAAAG
GTGGAGCGTAAAAGCTGTTTATTTTGGCCATTGATTGTTTTTTAAATTTCTTACTAACATAATT
TTATTTTTTGTATTATATTTAGATGCCTTGAAGTCAGAAAAAGGATTTTGTCTGAGGAACATTT
TCAGGTTTGTATCATATTTAATGTTTCATGTGATCTTTAGTGGAAATAAAACATGAAAGCATCA
TCTCAATGAAAAACTCACGAGCTTTCTTACATGATCACAATTCTCTTGTTTCTTAAAATTATGG
TTGCCAGATCACTTACCAGGTATTTGAGTTTTTCACCACAAGCTCTGCTTTATTGGCAATTAGC
ACAGACTGGGAGGTATTTGTGCCATGTGCCCCTGCCACGATGCTTGATTGGGAAGCAATGTAAT
CACTGTTGCTCCATATGTATTTTACTAGGTCATGGTGGCATCGCCAATTCATGTTGATTATCAC
CATTTCCATAGTTTGATGATTACATGATTAGATTGCTTCATTAGTGTTTCACTTCCTTGGTGCA
TGCTGTGTCCTGAGAAGCTGAGCCCAAGAAATGCAAATGTTTTGTTGAAAAATGTAGGACTCCC
TTGCTTTAGGTAGAGTATTGTCCATATCACCAATGGCAATTGTCATTGTTGACTGATGGTTGCG
GCAGCTACGGCACACACAAGACCATGTGACCTGCATCTGCTATGTTGAGTTCACGGTGCACCCC
TACATGTCAGGTGATACAGCAAAATGCCTAGTGGTGGGGAACTGGGGACTCTAGTGGCAAACTG
GCAATCAAAACTAATACTCTAATAGTAGCATTATGATGCTATGATCCTCAAATATTTGGATCAA
TCTAATGAAAATAATAATTACCATATAGATACCCTTCAGTCACAAATAAGTGTTGTTTTAGAAT
CCATGCGACATAATTATTACTACATCCGTTCCAGAATATAAGAAGTTTTAGTGTTAGACACGGT
TATTAAGAAAGTAAGTAGAATTAAATGGAGAGGTTGTGATTGGTTGAGAAGTGGAGGTAGGTGT
AGAAATTGAATGGTGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGATGGAGAAGTTGTAATA
TTTTTGGACAAAATTCTTAGTGCTAGAAGTTGTTATATTTTGAGACAGAGGGATTATTGTTTAG
AATATAGATCTGGGTATATGAAAATAACATGGCCAAATTCGTTATATCAAAAAAGCTTTCATAA
TGTCACGCTTCTGCAACTCATTTTGGATTTATGCTTTCATAATGTCACGCTTCTGCAACTCATT
TTGGATTTATGGAATTGAATTAAATGGTCAAAGTTATGTCTTATTGGCTTTTGGCTTTGAAAAG
TCGACACTTATTTGTGACTGGAGGGAGTACAGTTTAGTCTTCCACAAATATGTTATTGCGAGAT
GTACTGTTGAAGGTGCATCCCTGGAATCATGAAAAGTCAATAACACCGAGAATTGGGTTTTCCT
GCCGTTTCATATACAATCAATTTAATACTGGTTGTCACTAGCAACTAGCTGGAACCTAGTCCAC
TTGGTGGGTTCTAACTGGGTATTGCGACTACTTAACACAGTTTTTGAAATGATTCCATCTCCAG
TGGACAGTGATTGATTTCCTGTTGTTCCTAATGTTACAGGTAGCTGTTACTTTGGTACACTTGG
CAAGGCTAACCATGCTAAACTTTATTAGTGACAAGGAGGACAGTGACCTAGCAAGATCCAAACT
TGTCAGGGCAAGGCTACTTGTCAATGATTCAATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021