Detail information of BGIOSGA033357_circ_g.1


General Information
CircRNA Name BGIOSGA033357_circ_g.1
ID in PlantcircBase osi_circ_002923
Alias 10:19878701|19879082
Organism Oryza sativa ssp. indica
Position chr10: 19878701-19879082  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA033357
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033357_circ_g.2 BGIOSGA033357_circ_g.3 BGIOSGA033357_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033357-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCGGTCAACCCGCAACCC
GGTGCTCTCGTCATCAACATTGGCGACCAACTTCAGgacggatgaagtacttaattgatgaagc
gactgatcgaattcgtgatgacattgcagggagatcatcggcacgtactgcacagaggtaagag
agctaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGGATGAAGTACTTAATTGATGAAGCGACTGATCGAATTCGTGATGACATTGCAGGGAGATC
ATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATATCGGAGA
GCCTTGGGCTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACATGGCGGT
GAACTACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACACTGACCCC
AACGCCCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCA
AGTGGATTGCGGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021