Detail information of Os03g0737800_circ_g.6


General Information
CircRNA Name Os03g0737800_circ_g.6
ID in PlantcircBase osa_circ_021759
Alias NA
Organism Oryza sativa
Position chr3: 30254736-30256974  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0737800
Parent gene annotation Vps51/Vps67 domain containing protein. (Os03t0737800-01)
Parent gene strand +
Alternative splicing Os03g0737800_circ_g.1 Os03g0737800_circ_g.2 Os03g0737800_circ_g.3 Os03g0737800_circ_g.4 Os03g0737800_circ_g.5 Os03g0737800_circ_g.7 Os03g0737800_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0737800-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAAACACACACCGTGCCAGAAGTCAATTTTTAGAAAATCATCTAGCAAAATTATTCGAGCAG
AAAATGGAAATATTCACCAAAGTTGAATACACACAGactactcgggatattattagacaacata
tcgcaactgcctttcttcatcttcaaagtgaaatatcaggttgccctcctcccaccgcaatttg
ttttagtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 909
Transcript exons: 30254736-30254802,30254996-30255111,30255249-30255506,30
255604-30255720,30256352-30256423,30256537-30256587,3025
6747-30256974
ACTACTCGGGATATTATTAGACAACATATCGCAACTGCCTTTCTTCATCTTCAAAGTGAAATAT
CAGATGTACTCGCCAGAACACCCTCGACATCAAATGGGAAGTTAGAAGAGTCACAGCTGCAAAC
TGCCATGGAAACAAGCAAGGTTAAAGTATTGCAAGGATGTATAGATCTCCTGCAGGAATTTCAT
CATCTTATAGATGGCAATACAGAGTTACTTGTAAAACTGAGAGATTTGGTTATTGATTGGGTAC
AAGAAGGTTTTCAAGATTTCTTTCAGAAACTTGATGGGCATTTTCATATGCTTTCTGGGAGAAG
CAAGAGTCCATCTCAAGAGATGGAATCGGTGCAAATTGATAAGGTTCCAACGGCTTTGGTGCTT
ATGCTTGCACAACTTTGTGTTTTCATAGAACAAACAGCAATTCCCAAAGTCACAGAGGAGTTGG
CTTCTTCTTTTTCTGGAGGTGGTGCACGTAGCTATGAATATGGGCCACCTTTTGTGCCTGGAGA
GATATGCCGGCTTTATCGTTCATCTGGGGAGAAGTTCTTACATCATTACATAAATATGAAGACA
CAGAAGATCTCCAAACTTCTTAATAAACGATTTACAACTCCAGTCTGGATAAAGCACAAGGAGC
CGCGGGAAGTGAATATGTTTGTTGATCTACTTCTCCTAGAGTTCAATGGAGTAGTGTCTGAAGT
CAAACAGGTATTACCTGGTTTGATTCGGCGACATCGACATTCTGATAGCACTGGCAGCACAACT
TCCTCAAGAAGTAATCCAATGCGAGAGGACATGTTGAACCGATCAAACACACACCGTGCCAGAA
GTCAATTTTTAGAAAATCATCTAGCAAAATTATTCGAGCAGAAAATGGAAATATTCACCAAAGT
TGAATACACACAG

Genomic sequence ACTACTCGGGATATTATTAGACAACATATCGCAACTGCCTTTCTTCATCTTCAAAGTGAAATAT
CAGGTTGCCCTCCTCCCACCGCAATTTGTTTTAGTTTTGCAAGTTTCGTGCAGAACTAATTGAT
ATGATTTAAATTTGTTTTTTTCCTGCAACTACTTAGTTTTTTTGGGCTTTTAGCTTGTAGTACA
GATAGGTTTGAAAACAATAAAGTATTTCCAAGGAAAAAAACTAATTTGTCTGGTGTATGTGTGA
GCAGATGTACTCGCCAGAACACCCTCGACATCAAATGGGAAGTTAGAAGAGTCACAGCTGCAAA
CTGCCATGGAAACAAGCAAGGTTAAAGTATTGCAAGGATGTATAGATCTCCTGCAGGTATATAT
TGTGGATAATCTGCGGCATAATATTGTCCAAATAACATGCAGTTCTTTTACAAACTACTAGTAA
GCCTATGCTTGCATAAGAGCATATATTCCAATGTTCTCATTTTTTTTTTACTATGTTGTTTCTA
GGAATTTCATCATCTTATAGATGGCAATACAGAGTTACTTGTAAAACTGAGAGATTTGGTTATT
GATTGGGTACAAGAAGGTTTTCAAGATTTCTTTCAGAAACTTGATGGGCATTTTCATATGCTTT
CTGGGAGAAGCAAGAGTCCATCTCAAGAGATGGAATCGGTGCAAATTGATAAGGTTCCAACGGC
TTTGGTGCTTATGCTTGCACAACTTTGTGTTTTCATAGAACAAACAGCAATTCCCAAAGTCACA
GAGGTATATTGCTAGTTTCACTTTCTAGCTATCATTTTTAGTAGTTTGTTTAGTTTGGGTAGAT
ATGTGATGGACTGATCTTTTGTATCACCAATTTTAGGAGTTGGCTTCTTCTTTTTCTGGAGGTG
GTGCACGTAGCTATGAATATGGGCCACCTTTTGTGCCTGGAGAGATATGCCGGCTTTATCGTTC
ATCTGGGGAGAAGTTCTTACATCATGTAGGCAAACTTGTCTTTCATTCTTCCATTTCATTATTA
TATTTTTTATGGTCCGTGTCATATGATGTGATTTTTCTCTACTATTCAGCAGGCTAGGGTGGAA
CTTTTTTTTCTTTTTCTTTTTTTTTTTGCGTGGAACTATATTGTTTTACTCCATTCCTCAAATT
CTGTTGAACTGTTTGAAAAATTATGTCATGAGCACTATGTGCCTAAGGGGCTTAGAGTAGCTGA
TGCCAGTGGGTATGAATTATGATTGAGCCAATCCATCAACCCATCCTACCTTTTGCTTTACCAT
TAATGCATGATTCATGTGCACAAAGTGAATCCAATTTAATAGGAATGAACAGCCAATGAATTGG
AATAGGTCAATGGATTGGTGGCCCACTTGCATTCTGAGTAGCCTTATGTCATGAAAAAAGAGTG
CACCTTAATGCTATAACTTGATCTAGAATCATGCTTTCAAAAGCAGTACAATGTTGCCAAGTGG
TAGTTTAATATGGGGTCGTATGGTAGCAATCCCATGTCATGAGAATATATCTAATATCACTGTT
TATTTTCTTATATCTGTTAAGTACAATTTGTCTTGAGTTCGCTACGCGACATATAACCAAACAT
TGACTTCCTTGGGCAGTACATAAATATGAAGACACAGAAGATCTCCAAACTTCTTAATAAACGA
TTTACAACTCCAGTCTGGATAAAGGTGAGCCTTTCTGTTTGACAAGAAATATTTGTAATTTCAA
TACTCATATATTCTTATTTTATCGGCCAAATTTGTATGTTTTGACATTTCCTGTATATATTTGA
TCAAAATAGCACAAGGAGCCGCGGGAAGTGAATATGTTTGTTGATCTACTTCTCCTAGAGGTTT
GTTCAGTCACTTATCAGATTGAAATTGTGTGCTCATGCACATTAAACTATAATCGAGCATGCGT
TATCTTTCCGAATTTAGCTTTTGGAGCCTTGAAATGCTGCTGATGGATTTTGTTAGTTTCTTTA
ACATATCACTCTCTTTCTTTTCTTTAGTTCAATGGAGTAGTGTCTGAAGTCAAACAGGTATTAC
CTGGTTTGATTCGGCGACATCGACATTCTGATAGCACTGGCAGCACAACTTCCTCAAGAAGTAA
TCCAATGCGAGAGGACATGTTGAACCGATCAAACACACACCGTGCCAGAAGTCAATTTTTAGAA
AATCATCTAGCAAAATTATTCGAGCAGAAAATGGAAATATTCACCAAAGTTGAATACACACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.240644845
Functional Information
Coding potential Y
Potential coding position 30255062-30256971(+)
30254785-30256929(-)
Potential amino acid sequence METSKVKVLQGCIDLLQEFHHLIDGNTELLVKLRDLVIDWVQEGFQDFFQKLDGHFHMLSGRSK
SPSQEMESVQIDKVPTALVLMLAQLCVFIEQTAIPKVTEELASSFSGGGARSYEYGPPFVPGEI
CRLYRSSGEKFLHHYINMKTQKISKLLNKRFTTPVWIKHKEPREVNMFVDLLLLEFNGVVSEVK
QVLPGLIRRHRHSDSTGSTTSSRSNPMREDMLNRSNTHRARSQFLENHLAKLFEQKMEIFTKVE
YTQTTRDIIRQHIATAFLHLQSEISDVLARTPSTSNGKLEESQLQTAMETSKVKVLQGCIDLLQ
EFHHLIDGNTELLVKLRDLVIDWVQEGFQDFFQKLDGHFHMLSGRSKSPSQEMESVQIDKVPTA
LVLMLAQLCVFIEQTAIPKVTEELASSFSGGGARSYEYGPPFVPGEICRLYRSSGEKFLHHYIN
MKTQKISKLLNKRFTTPVWIKHKEPREVNMFVDLLLLEFNGVVSEVKQVLPGLIRRHRHSDSTG
STTSSRSNPMREDMLNRSNTHRARSQFLENHLAKLFEQKMEIFTKVEYTQTTRDIIRQHIATAF
LHLQSEISDVLARTPSTSNGKLEESQLQTAMETSKVKVLQGCIDLLQEFHHLIDGNTELLVKLR
DLVIDWVQEGFQDFFQKLDGHFHMLSGRSKSPSQEMESVQIDKVPTALVLMLAQLCVFIEQTAI
PKVTEELASSFSGGGARSYEYGPPFVPGEICRLYRSSGEKFLHHYINMKTQKISKLLNKRFTTP
VWIKHKEPREVNMFVDLLLLEFNGVVSEVKQVLPGLIRRHRHSDSTGSTTSSRSNPMREDMLNR
SNTHRARSQFLENHLAKLFEQKMEIFTKVEYTQTTRDIIRQHIATAFLHLQSEISDVLARTPST
SNGKLEESQLQTAMETSKVKVLQGCIDLLQEFHHLIDGNTELLVKLRDLVIDWVQEGFQDFFQK
LDGHFHMLSGRSKSPSQEMESVQIDKVPTALVLMLAQLCVFIEQTAIPKVTEELASSFSGGGAR
SYEYGPPFVPGEICRLYRSSGEKFLHHYINMKTQKISKLLNKRFTTPVWIKHKEPREVNMFVDL
LLLEFNGVVSEVKQVLPGLIRRHRHSDSTGSTTSSRSNPMREDMLNRSNTHRARSQFLENHLAK
LFEQKMEIFTKVEYTQ(+)
MKKGSCDMLSNNIPSSLCVFNFGEYFHFLLE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017