Detail information of Os03g0737800_circ_g.2


General Information
CircRNA Name Os03g0737800_circ_g.2
ID in PlantcircBase osa_circ_021755
Alias Os03circ25810
Organism Oryza sativa
Position chr3: 30250363-30255287  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os03g0737800
Parent gene annotation Vps51/Vps67 domain containing protein. (Os03t0737800-01)
Parent gene strand +
Alternative splicing Os03g0737800_circ_g.1 Os03g0737800_circ_g.3 Os03g0737800_circ_g.4 Os03g0737800_circ_g.5 Os03g0737800_circ_g.6 Os03g0737800_circ_g.7 Os03g0737800_circ_g.8
Support reads 2
Tissues panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0737800-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTTGCATAAGAGCATATATTCCAATGTTCTCATTTTTTTTTTACTATGTTGTTTCTAGGAA
TTTCATCATCTTATAGATGGCAATACAGAGTTACTTggaaaacatagagaaactacatcgtaca
cgcaatctcctccgaaaagttcaagtaagcattgttctgtctgtgttattctcccccaaaacta
cttttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAAACATAGAGAAACTACATCGTACACGCAATCTCCTCCGAAAAGTTCAAGTAAGCATTGTT
CTGTCTGTGTTATTCTCCCCCAAAACTACTTTTTTTATATGATCCTGTTTGTAGTGTAGTACTG
TTATCATCAAGAACTAATGATTTACACAGACAAATTGTGTTATGTGGATTTTGGCAATATCAAT
TTATTAGTTAAACCTTAGTAGTACTCCGTATACTATTGCTGTACAATAATGATCCCAGTGGATT
TTATCGGAAGCCCAAGTGATTTTATGTGTTTGGCTTAGTTCAATGCTTGGAGTTGAATTTGACA
ATGAATCAATAACGGCACACAAATCCGACCTAAACTTTGAGTTTCATCTTTCCATGAAGCGAGG
GCATAAGTGCAACTGAGTTGCTCCACATGTGTAGTCTATGCTGCTTGGTAGTTGGCTGTAACCT
ATTGTGTCCACTAGGCCATATAGCATTACATTAATTGTGTATTATCAATGTGGATTGCATTTCT
CCCACTCTTTCATCCTAAAAGGACCATTCACAAGCTACTTGAAATCACTTTGTCATACATGAAA
TACACAAAAACCATATTATGCTTGACTAACATGAGCTCTATGTCTTGATTACTTGCTGCAAGAC
ATTCATGAAGAAAATTCTAGGCCAAACTGACTTGATAAATCCTGAAATGTTTGTTTCTATCAAA
TTTTGTTGCAGTTCATATATGACCTGCCGACTCGGCTTAACAAATGCATCAAGACAGAAGCATA
TGCGGATGCTGTCAGATTTTTTACTGGAGCAAAACCTATTTTCGAGGTTGAGTTTGACTTTTAT
TTCCTCTAGTCAGAAACTTCCTTGAACACATCTTTATCACTATTTTTTAGCTTATCTTTCTTCC
TGATGATAGGCTTATGGCGACACTTCCTTTCATGACTGTAAAAAAGCATCTGAGGAGGCAATCG
ATTTAGTTACACAGCACTTGAAGGTAATTGTTTTGCATTTTGACTCAGAATTAGTTGTTCTTCA
AATGATAATTTCCTTACCACGTAAATGTATGCTTCACTCATTTCCCTGTAACATTGCAGACAAA
ATTATATTCAGATTCTGAACCTATTGAATCAAGAGCAGAAGCTGTGGTGCTTCTTAAACAGCTC
AACTTTCCGGTAATTATTCCATCTATCTCTTAGTCTTCATGATTTTCTTTGTTCTGTTTAGCTC
TACTATCCCATGCAATGTTAGTTATAACTAGCTAAATGCCTGCGTCTTTTCTACTGATAATCTC
ATGCTGTCATTATTTGAACAAATGAGCGTGATTTTTTTTTTCTCAAGGGTCCGTCAATTTTTTG
TTAAATGGAGCACTTATAGATTTACATAATTCCACCTGTAAAAGTTATCTTCTATACTGCATAT
GCAGGTCATCTTAGATTTCTCAGTTTTAAGTTTTTATTTTAGAGAGTAAACAAGAAAGTAACAA
CATGTGATAATATTAATGTGTAATATCAAAGACCTCCAAGTACTCCTAGCAAAAAATATAGTGC
ATAGTTGGTGGGGTGAAAGATCACTGCCATTACCGCTATTGCATTCTTTTAAAAGGAGTATAAA
CAAGCGCTACCACAAGATAATGCTGGAATGATCAACGATTCAACTTGTTCTTAATATCCATGCT
AGTGGTACTCTTAATGGGATGTCTACATTTCAACATCTCTTAGCTTAAAAAACTTCCAAAACTT
ATCCTCCTGATACATCTTCTCATTCTCCAACCTTCTAACTTGTAGAACTAGTGGAACACCTGAA
CTCCTTTCTTCATATAAAGTTTTTTTCTTCTATTGTGATGCCTATTTTAACTTTTGTGCATGGG
CACAGATCTTCTATTCTCTACACAATAGAACTACCATACGCTGATAATCTATAGTGGTTAATTC
TGAGTTTTTGTTATATCTATTTTATTTGGTACATGTGTGAATATGACCTGTTAGTCAGATATCA
ATCAATGAAAATGACCATCACCCATAACAATTCTTATGCAAACGCCGTTACTTATTTTCCACTA
TAGCATTAAACTTCATATTTATTAACTGTGGTACTTATACAGCAATAGCACTCTCAGCTGCTCC
GTATCATTTTCTTGACTCATAGATCTTCCGCAATAACACTGTCAGCTGGTCACAAGACTCTGCA
TTGATATGTTGAACCTCTGTTTATCGTTTTTATAATGAACTATGAGGCGATGCCCGAAAACAGG
AAATAATCATGACTTTCTGTGAAGCAGGCAAGCAATAAACACAAATAACTAGTACATTGCTATG
CTGTCCTGATGAAATAGCTAATAGATTTACTCTATTTGCATATAGTTCCCTATGTTTTTCTGTA
AATCTTATCATGTTTAATTTTTAAATCAACAGGTGGACAGCCTGAAATCAAACCTACTTGAGAA
GTTAGAAGATTGCCTCTTAAATTTCCAGAAGGAGCCCACACAGGTATATATATATATATATAAG
AAATGTTAGAACTACTCAACAACTTCCATTTTATTTTTGACGAAAAATCTATAAAGTGTGACCT
ATTCGCAGGACTCAATTTACAATCCTTTTGCCAACCTCCTTACCAATAAATTATCTAATACCCT
CCTGTATAACTTTCTCAGGCTTCAATTGGTGATATTTCAAAGACATTCCGTGCTTATCTCATAA
TATTTCCTGATTCAGAAAAGCGCCTCATTGAACTTGCACAGGCTTTGTTCTCAAAGTAAGTTGA
TTTTATATCTTATGCAAACAAACCATCATCCGTTTTTGAACAATGAATAACCAAGTCCTATCCG
AATTCGTTGTTGTTTTAGGATTAGCTCCCACAATACCACTACCACGTAAAATTACATGATAGTT
CTGCCCTCATTAATAAATGGTCATATCTCCACATGGTATTAAGAACAACCAGTAACTGAGGTAG
TTGATATGAATGAAATCTTTTTGGAAGAAACCAGCTAGAAATGTCACATAACAAGTGTTTCTGC
AGTGATTCTTGTTTTCTAGAAGGGAAAACAATCTTAAAGTTAGTAGTAAGTGGTGTCCCCTCTG
GAGACTGGATATGAATACATGCACTTTTGGACTTAAATGCAGTCAAATTTAGAGAATCAACACT
TGTATTTAGATTGGAAATATGAAAAACCATGTGTAGGCTTGCCTAAAAGTATACTTTAATACTA
TCATAATTTTGTCAGGTTTTATAAATATAGCAAAAGAAAACAGTGGTTAAAGTTGCAATGTGGG
TTCCCTTTCAGTACTTGTTACCAGAGATAGTAATAACTCATAGTACATTATACCTCGATACCTT
CAGCATGTTTATCCTGTTTGCTTCCTGTTTTAACTTGCATTTCTACTACGAGAATTTTATCATA
TATATACATTGTCTTACATTTTTTCTTATTTTACATGAAGCCGGTATGAAACGGTCAGAGAGAA
TCTGAGGAAAAGAATTCCATCAACATATCTATTGGCTATGTTACGTAAGAACTTACCTATGTTA
CTGTGCCATCTCTATTTTGTACTGAATATATGTAGACTGAACAATAAGTTGAGGATTAAGACTT
GTTAAGTTTTTGAATAAATGGACTGTTGGGTTTTGAATTATTGAATTAGTATATTACATAAAAA
TTTGTTGTTTACCTATGGAGTCCTCACTGTCGATATTACTGCAAGTTGTAAGATCGTTGCATGT
CCTTTGATTTAAGTCTGCTCCTTTTTTATGATCTCAGGATCCTTATGGGAGGACGCCACTGCCA
TTGATGAAGTTATACCTGAGGCTGCATTACCAGCTTTTTCTCTGGAGGTTTGACCTTGACCCTG
TAACAACCTATTCATGGTTCTAAACCGGCTGATGTGTTGCTAGCTGCTAACACTTAACCACAAA
GGTCATATTGTGTAGCCATTTGGTAGAAGTGTAGAACATCTAGCAGATAGAAGTGAACTGGTTG
CATGGCTAAGTTTGGCTTTGGTGAATGGATGCATTTCTTAGTTGATATCCATAATTACCCACAT
TGTTTTTGCAATCGTCAGTGTTGAGGATTGAGGATTATTCTGTCACGGGTTTGCTAGAGGAGTA
TGATAATCTTATCCTGAAAGCTCTATTTTACGAATTTACAAATCAACAAAAAGCTGTTTGGCAA
TATATGTCTAGCTGAGGGTATTTTGTTAGTAGTAGAAAGTAATAGTTGTACTGTTAGTTTATTG
ACCCCTGTTTTCCATTACTCAAGTGATAAACTGAATATACTTCTGTAACCCAATTGCTTATTTT
GGGTATTCTCCATGTCAACAGAACTGTTTATATATCTTGATAGTTGACATTGATTTCACATGTG
CCAATGCCTTTTCTGTGCCAGACTACTCGGGATATTATTAGACAACATATCGCAACTGCCTTTC
TTCATCTTCAAAGTGAAATATCAGGTTGCCCTCCTCCCACCGCAATTTGTTTTAGTTTTGCAAG
TTTCGTGCAGAACTAATTGATATGATTTAAATTTGTTTTTTTCCTGCAACTACTTAGTTTTTTT
GGGCTTTTAGCTTGTAGTACAGATAGGTTTGAAAACAATAAAGTATTTCCAAGGAAAAAAACTA
ATTTGTCTGGTGTATGTGTGAGCAGATGTACTCGCCAGAACACCCTCGACATCAAATGGGAAGT
TAGAAGAGTCACAGCTGCAAACTGCCATGGAAACAAGCAAGGTTAAAGTATTGCAAGGATGTAT
AGATCTCCTGCAGGTATATATTGTGGATAATCTGCGGCATAATATTGTCCAAATAACATGCAGT
TCTTTTACAAACTACTAGTAAGCCTATGCTTGCATAAGAGCATATATTCCAATGTTCTCATTTT
TTTTTTACTATGTTGTTTCTAGGAATTTCATCATCTTATAGATGGCAATACAGAGTTACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.09567092
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015