Detail information of Os08g0562700_circ_g.21


General Information
CircRNA Name Os08g0562700_circ_g.21
ID in PlantcircBase osa_circ_038130
Alias NA
Organism Oryza sativa
Position chr8: 28179933-28181004  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0562700
Parent gene annotation Similar to peptidase M1 family protein. (Os08t0562700-01);Simila
r to predicted protein. (Os08t0562700-02)
Parent gene strand -
Alternative splicing Os08g0562700_circ_g.17 Os08g0562700_circ_g.18 Os08g0562700_circ_g.19 Os08g0562700_circ_g.20 Os08g0562700_circ_g.22
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0562700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGCAAGAGGGAGGCACACACCTCCTTCCTTAAATTAGGAAGGTAGCAATTCTTCAGTTGGGA
ACTCCTATGCGATGATGACAATGGCAGGCGATGATActtaaggtccttgccattgactttgatt
gatagcagcttcagatcacgcccatgaagagtaagtggagaggaggtacctgatacaattatta
aaaagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAGGTCCTTGCCATTGACTTTGATTGATAGCAGCTTCAGATCACGCCCATGAAGAGTAAGT
GGAGAGGAGGTACCTGATACAATTATTAAAAAGAATTAATAAGGAAGTACAGACTACAGAGCCT
CATTTTAAGCACGATAAGCTAAGGAAAGAAATTGAGAAACAAACAAGTACACGAGAGATCTAAA
GACATGCAATGAGAAACCAAATGGTAATTCCAACGATGTATAAAAGTGCGTGTTCGGCTAAGTC
AAATGGATATGAAAGGGTGTGTGTTACCTTCAGTTCCTGGAGATACAGCTATTTTAGATGTAAC
TATTGTTTTGTCTTCGCCAAGTTGAAATTCCAAATTGACCTGCCCAAAATTAAGTCCCAGCATA
AAGTCAGGAAGGTAGTAAAGACAACAAACAGAAAGGAGCCCATTATGTTCATTAAATGCCAAGA
TGCCCATACAGGCTAGCATATATATCTAGTTAAATTTCAGATTGCAAACAGCTAAGTATCCATA
GATATGGTGTTAGAAAGCCTGCAAGCCGGAGTTCAGATATTGAAAATTTTGGATGGTTGCAAAA
AAAGAGAGGTATGTAGTTACCGAGTCAAATAAGTAATCAGGCTTTTTGTATTCTTTCAGGAATA
TCTCCTTTGGAAGATCCATCTCTGGTTCTTCGGTTGTGGAAGGCGGCGGCTCGGTTGCAACGGA
ACAAGTTGTCCTCTTGCTGGCAAGCCTTGCACTCTGAAATATCGGGAAATTGTCCGATCAAGAT
GTACTCTACAGAAGTAAAAACATGGAGTTAATGAAGAAAAGTAACATATAAGCGAGATGATACA
GACATATAGCGACAAGGAAGGCGTGGCTGGTCTTGTCCAATGCGAGACCTACAACAATACAAAC
TAGAATCTATAAGCAACAGCAGCAATGCCATGCAACAAAAGCTATAACTGGGTGGGTGGCATGA
GATTATCATCTGAGAGCAAGAGGGAGGCACACACCTCCTTCCTTAAATTAGGAAGGTAGCAATT
CTTCAGTTGGGAACTCCTATGCGATGATGACAATGGCAGGCGATGATA
Conservation Information
Conserved circRNAs NA
PMCS 0.111474557
Functional Information
Coding potential Y
Potential coding position 28180593-28179935(-)
28179951-28180961(-)
Potential amino acid sequence MDLPKEIFLKEYKKPDYLFDSVNLEFQLGEDKTIVTSKIAVSPGTEGTSSPLTLHGRDLKLLSI
KVNGKDLKYHRLPLSSSHRSSQLKNCYLPNLRKEVSHWTRPATPSLSLYSARLASKRTTCSVAT
EPPPSTTEEPEMDLPKEIFLKEYKKPDYLFDSVNLEFQLGEDKTIVTSKIAVSPGTEGTSSPLT
LHGRDLKLLSIKVNGKDLKYHRLPLSSSHRSSQLKNCYLPNLRKEVSHWTRPATPSLSLYSARL
ASKRTTCSVATEPPPSTTEEPEMDLPKEIFLKEYKKPDYLFDSVNLEFQLGEDKTIVTSKIAVS
PGTEGTSSPLTLHGRDLKLLSIKVNGKDLKYHRLPLSSSHRSSQLKNCYLPNLRKEVSHWTRPA
TPSLSLYSARLASKRTTCSVATEPPPSTTEEPEMDLPKEIFLKEYKKPDYLFDSVNLEFQLGED
KTIVTSKIAVSPGTEGTSSPLTLHGRDLKLLSIKVNGKDLK(-)
MARTLSIIACHCHHRIGVPN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017