Detail information of AT2G05840_circ_g.1


General Information
CircRNA Name AT2G05840_circ_g.1
ID in PlantcircBase ath_circ_012929
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2234706-2234936  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05840
Parent gene annotation Proteasome subunit alpha type-6-B
Parent gene strand +
Alternative splicing AT2G05840_circ_g.2 AT2G05840_circ_g.3 AT2G05840_circ_g.4 AT2G05840_circ_g.5
Support reads 1
Tissues leaf, aerial
Exon boundary   Yes-Yes
Splicing signals   GC-AG
Number of exons covered AT2G05840.3:2
AT2G05840.2:2
AT2G05840.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTATGAAAGTTACTAATACTGAACTATTGTGCTGTGACAGGATTGCAGATAAGTCTCAGGTTT
ACACACAACATGCTTACATGAGACCCCTTGGAGTAGctgattcaaggtcattggtacaacaagc
taggaatgaggctgctgagtttaggttccaatatggttatgagatgcctgcagatattcttgct
aaatggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAGGCTGCTGAGTTTAGGTTCCAATATGG
TTATGAGATGCCTGCAGATATTCTTGCTAAATGGTAATTAATTACAGACTCTATGTGTCTCTCT
ACACTTATGAAAGTTACTAATACTGAACTATTGTGCTGTGACAGGATTGCAGATAAGTCTCAGG
TTTACACACAACATGCTTACATGAGACCCCTTGGAGTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.196213711
Functional Information
Coding potential Y
Potential coding position 2234777-2234933(+)
Potential amino acid sequence MPADILAKWIADKSQVYTQHAYMRPLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIAD
KSQVYTQHAYMRPLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMR
PLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGV(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017