Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G05840_circ_g.1 |
ID in PlantcircBase | ath_circ_012929 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 2234706-2234936 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT2G05840 |
Parent gene annotation |
Proteasome subunit alpha type-6-B |
Parent gene strand | + |
Alternative splicing | AT2G05840_circ_g.2 AT2G05840_circ_g.3 AT2G05840_circ_g.4 AT2G05840_circ_g.5 |
Support reads | 1 |
Tissues | leaf, aerial |
Exon boundary | Yes-Yes |
Splicing signals | GC-AG |
Number of exons covered | AT2G05840.3:2 AT2G05840.2:2 AT2G05840.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.196213711 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2234777-2234933(+) |
Potential amino acid sequence |
MPADILAKWIADKSQVYTQHAYMRPLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIAD KSQVYTQHAYMRPLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMR PLGVADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGV(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |