Detail information of Os01g0186700_circ_g.3


General Information
CircRNA Name Os01g0186700_circ_g.3
ID in PlantcircBase osa_circ_000620
Alias Os_ciR6523
Organism Oryza sativa
Position chr1: 4623238-4626561  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0186700
Parent gene annotation Similar to Protein kinase GhCLK1 (Fragment). (Os01t0186700-01)
Parent gene strand -
Alternative splicing Os01g0186700_circ_g.2 Os01g0186700_circ_g.4 Os01g0186700_circ_g.5 Os01g0186700_circ_g.6 Os01g0186700_circ_g.7 Os01g0186700_circ_g.8 Os01g0186700_circ_g.9 Os01g0186700_circ_g.10 Os01g0186700_circ_g.11
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0186700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGTCAACATCACATAATAACCGGCAAATGAGATCCCTTGCTTCAGGAGACACCTTTGAATC
CTCTGGAAATTTCAAATGGTTTCTCCAGTGGACAATctttcttgagggcccggaacctgttctg
gttggagcattatccatctgcagcagacagttcagttagttaagacagaggaatgaaaaatata
ggcaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTTGAGGGCCCGGAACCTGTTCTGGTTGGAGCATTATCCATCTGCAGCAGACAGTTCAGT
TAGTTAAGACAGAGGAATGAAAAATATAGGCAAAACACATAGGTAGGAGAGAAAAAAATGTAGT
GCAACACATGGAAGGATGAAAATTAGACATTCCAATTTAACAAGCAGACTAGAAACAATAACAT
ATTCTGCCCAAGTGCTCACATGCAAACATAGATCCCTTGAACAAGAAAATGAGAAAAAAAAGTC
CACTGACTTGAATTAACAAAAATCCAAGAGTAAACCCATAGCTTGTACTCCACAATCGTTGTGC
GTATAAATTGTTTGAGGCTCTGCACAATCCTTGTGCATATTATACGGTACTCAAGGAGACGTTG
AGTCTCTATATGCACAGGAGTATATGAACATTGCTGCATGCATCTGTTTTGGTAGCGGCGAGAC
GCAATCATGCAGTGATGTGGGCGCATGTGGAGCTGGTGCGAGAGTTTCCCTGGGCACGGGGAGG
GTGCAACAGGCGAACAGCCATGCGCGCGTGGCACATGCAAGGGAAACTGAATCCTTGTGCGGCT
TGTTCGATGCGCTCCTTGGTATCGCTGTAAATAAATTATACGCACAACGATCTTGGATGGAGGA
AGTAACTGACACAATGGAAACTTCCTCTAAAACCAAAAAAAGAAGTCAATTTGGTCTTTCAAGT
TTCGTCCTGAGATCAATTTGGGTCAATAAGATCGCTGAGCCCACCTAAGTACCTAACCCTCCAT
GCAGGCAAGATAACTCAGCAAGGCCAGCCCTAGTTGAAAGACCCAAGGCAAGAGTGTTTTGCCC
CTATATCTTCGATTGAAAAGAAAAAACAATGATGGTAAAACCGTAAAAGGAGCCAGACCATGGT
TTTTTTATTCTTAAATAGTGTGATGGTAGAATAGACTTTTCACCATTGAAATTCCCACTAAGGC
TAAAGTTCCGCTTATCTTGCTAACATTGGGACCAAGGACCATATTGACCCAAAAAGTATAATTC
AAGTAGTGAGTTGGCCAAAATGAAACATTTTTGGGGTCATTGACCCTCAAACGAAAATTGGACA
GAATGAGCTGTTCTCACAAATCCCTACAACGACTCAAATAGTAATCACAAGGTCAAATTGTGGC
TTGGTGTCATGTCAACTCTAATTACCAATCTAGTGAAGGCTGACCTCTGTTGATCCATCTATAC
TATCATGTAGCAGCTTAGGCAGATACGTGGATTCCTGACCGTCCGATCATTCGATTCAATGGCC
CAAATAAAAAGTGTGATTCACACCACATCCGCGCGCATCCACTTCCGCCTCGCACACCACGCCC
GCACATTCGTCCCCTGCCTCGATCGCGCTCGTACATCTCTCCACTGCCTCACGCATCGTCTGCC
ACCATCGTTGTCCCCCATCACCGCACGGAACTCGACCTCACTGCCCTCCCCGGACCTCCCCCGC
TGTGGTGCGCGTCCTCGCCACCCACCCCAGCCCGCCCTCAGCGTTCAACCTCGCTGCCCTCCCC
AGACCTCCCCTGCTCTGGCGCACGAATGCACGTCCTGGCCCTCCCATCGTTGTGGATTCGCTCC
TCTCCGCATCCCTGACCTCGGCCACACCCAATGATTCGATCTGGATATAATGGATCTGGATGAT
GTGCATAAGAGAGGTAATTTTGAGGTTTGTATTGCAGTACGAGGTAATTTTTGGATCATAATTA
AATTCAGCATGTTGACTGTATGTGTGCTAGGTGGAAGATTTTTTTGTACTTGCAAAATTCTGGT
GTCAATTTTGAATCGCATTATAATTCGTGCTATATACTGTTTGATAAGTTGGCCAGATCTAGGT
CTTCAGGATGGTATGATTTAGCAGATGCTTCATAGTTGCTGGATTTAAAACCAGTTCTATGCTA
ATTTTAGATCAAATATTGGTCATATATAGTAGGTTGTCTGAAACAGTACAACAATATAAAGAGC
TTCAAATTTTAAATTGATTTCACAAAACTTTTTTATCAGGAAATTAACTGCCAATTGCCATTTT
TTTCTATGTTATTTGACGGCAAATTTCAATTTGTTTGCTGTTTGGTCTAACTGCATAACAAGTT
ACTCGACGTCTTTCCGCTCTTATCTCGATTTCATCTGGTGCCTGTGAGCAGTGGCAGACGCTGG
ATTTCAAAACCGAGTATTCACTTAACAATTGCAAGTGCTGTGTCCCCAATGTTTACTGGGATAG
AGTTATGGGACTTGAGATAGTTGGCTACTTGGTTAGAAGTGGTGCGAGCCAGGAGTCTAGAAAA
ATGGATCTGTTGAGGGAAAAAAGGATCGAGATTGAAGTGTTAGATACAATTGAATATATACATA
TGTGATATACCTATATATATTATTTTTGTTTCACAAATTTTTGGGTATTCCCGGGAACCCTCCT
GCATCCGCCCCTACATGTGAGCACTCTATATCTTCACTTCGGTTGCTTTTTATTTCAATCATGT
TCTTACCAGCAAAGTCCTTATTTACTGGAAATTGTCATGTATCTATTGTGCATGTTCCTGAAGG
ATGTTGAGTGAATTTGTATTCCATTGTATAATCTCAAACGGAAGTATTGAGCATTTGATGTACA
TACTAATTGCACTAATACGAACACAATTTGTGTCAGATGATGAATCCAAGAATTTTAATTTGAT
TTATTTGGAACAATTTGGCAAGTTTAATTTTTAGTATTTGCCAGAGATAACATGTCTGGGGTAA
TTCATATTGACTTTTACGTGCGTTGCACGTGCACGTTTACTAGTTTATAATAGTTTGGATCAAG
ACTTATCTCGATATCTTTTTTTTAAAAGAATTATCTCAATATATTGCAATCCCCGTAATTCTAA
ATCAAGGCAATACCCAAGTATTGGCTGGAGCTTGGCAACTTTGAACCTTGCAGAATTGCAGAGG
CATAAGATAACCATTACACTAAGAGCAAAAGGAATCACTTACTTCCTCAAACTTCATGAAGTTC
TGTGTGTCCAGTTCATCATTTACTTGAGGCTTAAATGCAGCTTCCATCTCATATAGTTTTTCCC
AAGCAACTCCACGGAACCAAGGATGTGCCTAGTGATAAACAAATGACTAGTAAATACAGGACAA
GCAAACAAGACAAGAACTGCAAATGATACTATTTATTTCTCTTATGTGCCAAGTACCTTTATTT
GGTCTGCTCCTGCACTGCCAATCCTGTGGTCAACATCACATAATAACCGGCAAATGAGATCCCT
TGCTTCAGGAGACACCTTTGAATCCTCTGGAAATTTCAAATGGTTTCTCCAGTGGACAAT
Conservation Information
Conserved circRNAs osi_circ_011289
PMCS 0.320804815
Functional Information
Coding potential Y
Potential coding position 4626492-4626269(+)
4626294-4623240(-)
4623277-4626539(-)
Potential amino acid sequence MRSLASGDTFESSGNFKWFLQWTIFLEGPEPVLVGALSISSNFMKFCVSSSSFT*(+)
MEAAFKPQVNDELDTQNFMKFEEMDNAPTRTGSGPSRKIVHWRNHLKFPEDSKVSPEARDLICR
LLCDVDHRIGSAGADQIKAHPWFRGVAWEKLYEMEAAFKPQVNDELDTQNFMKFEEMDNAPTRT
GSGPSRKIVHWRNHLKFPEDSKVSPEARDLICRLLCDVDHRIGSAGADQIKAHPWFRGVAWEKL
YEMEAAFKPQVNDELDTQNFMKFEEMDNAPTRTGSGPSRKIVHWRNHLKFPEDSKVSPEARDLI
CRLLCDVDHRIGSAGADQIKAHPWFRGVAWEKLYEMEAAFKPQVNDELDTQNFMKFEEMDNAPT
RTGSGPSRK(-)
MLQPEQVPGPQERLSTGETI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017