Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0186700_circ_g.3 |
ID in PlantcircBase | osa_circ_000620 |
Alias | Os_ciR6523 |
Organism | Oryza sativa |
Position | chr1: 4623238-4626561 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os01g0186700 |
Parent gene annotation |
Similar to Protein kinase GhCLK1 (Fragment). (Os01t0186700-01) |
Parent gene strand | - |
Alternative splicing | Os01g0186700_circ_g.2 Os01g0186700_circ_g.4 Os01g0186700_circ_g.5 Os01g0186700_circ_g.6 Os01g0186700_circ_g.7 Os01g0186700_circ_g.8 Os01g0186700_circ_g.9 Os01g0186700_circ_g.10 Os01g0186700_circ_g.11 |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0186700-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011289 |
PMCS | 0.320804815 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4626492-4626269(+) 4626294-4623240(-) 4623277-4626539(-) |
Potential amino acid sequence |
MRSLASGDTFESSGNFKWFLQWTIFLEGPEPVLVGALSISSNFMKFCVSSSSFT*(+) MEAAFKPQVNDELDTQNFMKFEEMDNAPTRTGSGPSRKIVHWRNHLKFPEDSKVSPEARDLICR LLCDVDHRIGSAGADQIKAHPWFRGVAWEKLYEMEAAFKPQVNDELDTQNFMKFEEMDNAPTRT GSGPSRKIVHWRNHLKFPEDSKVSPEARDLICRLLCDVDHRIGSAGADQIKAHPWFRGVAWEKL YEMEAAFKPQVNDELDTQNFMKFEEMDNAPTRTGSGPSRKIVHWRNHLKFPEDSKVSPEARDLI CRLLCDVDHRIGSAGADQIKAHPWFRGVAWEKLYEMEAAFKPQVNDELDTQNFMKFEEMDNAPT RTGSGPSRK(-) MLQPEQVPGPQERLSTGETI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |