Detail information of Os01g0186700_circ_g.2


General Information
CircRNA Name Os01g0186700_circ_g.2
ID in PlantcircBase osa_circ_000619
Alias Os_ciR2768
Organism Oryza sativa
Position chr1: 4622722-4626561  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0186700
Parent gene annotation Similar to Protein kinase GhCLK1 (Fragment). (Os01t0186700-01)
Parent gene strand -
Alternative splicing Os01g0186700_circ_g.3 Os01g0186700_circ_g.4 Os01g0186700_circ_g.5 Os01g0186700_circ_g.6 Os01g0186700_circ_g.7 Os01g0186700_circ_g.8 Os01g0186700_circ_g.9 Os01g0186700_circ_g.10 Os01g0186700_circ_g.11
Support reads 4/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0186700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGTCAACATCACATAATAACCGGCAAATGAGATCCCTTGCTTCAGGAGACACCTTTGAATC
CTCTGGAAATTTCAAATGGTTTCTCCAGTGGACAATctgaatgtttcaatcctttcacagcatc
aaagtttttgtacgtatatcccacaaagctgaggtctttggaattcagcatcatctgtaaaatg
gtttcaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 373
Transcript exons: 4622722-4622803,4623238-4623282,4626224-4626337,4626430-
4626561
CTGAATGTTTCAATCCTTTCACAGCATCAAAGTTTTTGTACGTATATCCCACAAAGCTGAGGTC
TTTGGAATTCAGCATCATCTTTCTTGAGGGCCCGGAACCTGTTCTGGTTGGAGCATTATCCATT
TCCTCAAACTTCATGAAGTTCTGTGTGTCCAGTTCATCATTTACTTGAGGCTTAAATGCAGCTT
CCATCTCATATAGTTTTTCCCAAGCAACTCCACGGAACCAAGGATGTGCCTTTATTTGGTCTGC
TCCTGCACTGCCAATCCTGTGGTCAACATCACATAATAACCGGCAAATGAGATCCCTTGCTTCA
GGAGACACCTTTGAATCCTCTGGAAATTTCAAATGGTTTCTCCAGTGGACAAT

Genomic sequence CTGAATGTTTCAATCCTTTCACAGCATCAAAGTTTTTGTACGTATATCCCACAAAGCTGAGGTC
TTTGGAATTCAGCATCATCTGTAAAATGGTTTCACAAAAATCAGGTATGAACTTGGAGAGAACA
AAGAGAAACATAAATTTGTACTTGAACACAAATTCTACACCAAGTTAGGTGACTTAAAACTACT
CTTTGCAAACACTATTATGACCATTGGTCAGTTAATTAGTCTTCCGGGTAGGTGACAGTGGGTC
AAGGCGTTAGGCACAAAAATATATGCATAGCAGGTCGATTTTGTGGTTAAGCAGGCCTAAATAT
GGACAACCCTTTGCGTTTCTTATCAAATTATGATGGGTTCTGGAAAATCATAATTCAGTGGAAT
ATAAACACAGGGAAATAACTCAGCAGCCTAGAGCCCTACATATGAAGTTATGATGGAAAAGCAA
TTTTCAAGCAGTAAAAACACAATGGTCACTCTGCATTTAAACTACATAGCGAATTTCAAAGTTC
ATACCTTTCTTGAGGGCCCGGAACCTGTTCTGGTTGGAGCATTATCCATCTGCAGCAGACAGTT
CAGTTAGTTAAGACAGAGGAATGAAAAATATAGGCAAAACACATAGGTAGGAGAGAAAAAAATG
TAGTGCAACACATGGAAGGATGAAAATTAGACATTCCAATTTAACAAGCAGACTAGAAACAATA
ACATATTCTGCCCAAGTGCTCACATGCAAACATAGATCCCTTGAACAAGAAAATGAGAAAAAAA
AGTCCACTGACTTGAATTAACAAAAATCCAAGAGTAAACCCATAGCTTGTACTCCACAATCGTT
GTGCGTATAAATTGTTTGAGGCTCTGCACAATCCTTGTGCATATTATACGGTACTCAAGGAGAC
GTTGAGTCTCTATATGCACAGGAGTATATGAACATTGCTGCATGCATCTGTTTTGGTAGCGGCG
AGACGCAATCATGCAGTGATGTGGGCGCATGTGGAGCTGGTGCGAGAGTTTCCCTGGGCACGGG
GAGGGTGCAACAGGCGAACAGCCATGCGCGCGTGGCACATGCAAGGGAAACTGAATCCTTGTGC
GGCTTGTTCGATGCGCTCCTTGGTATCGCTGTAAATAAATTATACGCACAACGATCTTGGATGG
AGGAAGTAACTGACACAATGGAAACTTCCTCTAAAACCAAAAAAAGAAGTCAATTTGGTCTTTC
AAGTTTCGTCCTGAGATCAATTTGGGTCAATAAGATCGCTGAGCCCACCTAAGTACCTAACCCT
CCATGCAGGCAAGATAACTCAGCAAGGCCAGCCCTAGTTGAAAGACCCAAGGCAAGAGTGTTTT
GCCCCTATATCTTCGATTGAAAAGAAAAAACAATGATGGTAAAACCGTAAAAGGAGCCAGACCA
TGGTTTTTTTATTCTTAAATAGTGTGATGGTAGAATAGACTTTTCACCATTGAAATTCCCACTA
AGGCTAAAGTTCCGCTTATCTTGCTAACATTGGGACCAAGGACCATATTGACCCAAAAAGTATA
ATTCAAGTAGTGAGTTGGCCAAAATGAAACATTTTTGGGGTCATTGACCCTCAAACGAAAATTG
GACAGAATGAGCTGTTCTCACAAATCCCTACAACGACTCAAATAGTAATCACAAGGTCAAATTG
TGGCTTGGTGTCATGTCAACTCTAATTACCAATCTAGTGAAGGCTGACCTCTGTTGATCCATCT
ATACTATCATGTAGCAGCTTAGGCAGATACGTGGATTCCTGACCGTCCGATCATTCGATTCAAT
GGCCCAAATAAAAAGTGTGATTCACACCACATCCGCGCGCATCCACTTCCGCCTCGCACACCAC
GCCCGCACATTCGTCCCCTGCCTCGATCGCGCTCGTACATCTCTCCACTGCCTCACGCATCGTC
TGCCACCATCGTTGTCCCCCATCACCGCACGGAACTCGACCTCACTGCCCTCCCCGGACCTCCC
CCGCTGTGGTGCGCGTCCTCGCCACCCACCCCAGCCCGCCCTCAGCGTTCAACCTCGCTGCCCT
CCCCAGACCTCCCCTGCTCTGGCGCACGAATGCACGTCCTGGCCCTCCCATCGTTGTGGATTCG
CTCCTCTCCGCATCCCTGACCTCGGCCACACCCAATGATTCGATCTGGATATAATGGATCTGGA
TGATGTGCATAAGAGAGGTAATTTTGAGGTTTGTATTGCAGTACGAGGTAATTTTTGGATCATA
ATTAAATTCAGCATGTTGACTGTATGTGTGCTAGGTGGAAGATTTTTTTGTACTTGCAAAATTC
TGGTGTCAATTTTGAATCGCATTATAATTCGTGCTATATACTGTTTGATAAGTTGGCCAGATCT
AGGTCTTCAGGATGGTATGATTTAGCAGATGCTTCATAGTTGCTGGATTTAAAACCAGTTCTAT
GCTAATTTTAGATCAAATATTGGTCATATATAGTAGGTTGTCTGAAACAGTACAACAATATAAA
GAGCTTCAAATTTTAAATTGATTTCACAAAACTTTTTTATCAGGAAATTAACTGCCAATTGCCA
TTTTTTTCTATGTTATTTGACGGCAAATTTCAATTTGTTTGCTGTTTGGTCTAACTGCATAACA
AGTTACTCGACGTCTTTCCGCTCTTATCTCGATTTCATCTGGTGCCTGTGAGCAGTGGCAGACG
CTGGATTTCAAAACCGAGTATTCACTTAACAATTGCAAGTGCTGTGTCCCCAATGTTTACTGGG
ATAGAGTTATGGGACTTGAGATAGTTGGCTACTTGGTTAGAAGTGGTGCGAGCCAGGAGTCTAG
AAAAATGGATCTGTTGAGGGAAAAAAGGATCGAGATTGAAGTGTTAGATACAATTGAATATATA
CATATGTGATATACCTATATATATTATTTTTGTTTCACAAATTTTTGGGTATTCCCGGGAACCC
TCCTGCATCCGCCCCTACATGTGAGCACTCTATATCTTCACTTCGGTTGCTTTTTATTTCAATC
ATGTTCTTACCAGCAAAGTCCTTATTTACTGGAAATTGTCATGTATCTATTGTGCATGTTCCTG
AAGGATGTTGAGTGAATTTGTATTCCATTGTATAATCTCAAACGGAAGTATTGAGCATTTGATG
TACATACTAATTGCACTAATACGAACACAATTTGTGTCAGATGATGAATCCAAGAATTTTAATT
TGATTTATTTGGAACAATTTGGCAAGTTTAATTTTTAGTATTTGCCAGAGATAACATGTCTGGG
GTAATTCATATTGACTTTTACGTGCGTTGCACGTGCACGTTTACTAGTTTATAATAGTTTGGAT
CAAGACTTATCTCGATATCTTTTTTTTAAAAGAATTATCTCAATATATTGCAATCCCCGTAATT
CTAAATCAAGGCAATACCCAAGTATTGGCTGGAGCTTGGCAACTTTGAACCTTGCAGAATTGCA
GAGGCATAAGATAACCATTACACTAAGAGCAAAAGGAATCACTTACTTCCTCAAACTTCATGAA
GTTCTGTGTGTCCAGTTCATCATTTACTTGAGGCTTAAATGCAGCTTCCATCTCATATAGTTTT
TCCCAAGCAACTCCACGGAACCAAGGATGTGCCTAGTGATAAACAAATGACTAGTAAATACAGG
ACAAGCAAACAAGACAAGAACTGCAAATGATACTATTTATTTCTCTTATGTGCCAAGTACCTTT
ATTTGGTCTGCTCCTGCACTGCCAATCCTGTGGTCAACATCACATAATAACCGGCAAATGAGAT
CCCTTGCTTCAGGAGACACCTTTGAATCCTCTGGAAATTTCAAATGGTTTCTCCAGTGGACAAT
Conservation Information
Conserved circRNAs osi_circ_011287
PMCS 0.429577159
Functional Information
Coding potential Y
Potential coding position 4626542-4622778(+)
4626492-4622722(+)
4626294-4626508(-)
Potential amino acid sequence MVSPVDNLNVSILSQHQSFCTYIPQS*(+)
MRSLASGDTFESSGNFKWFLQWTI*(+)
MEAAFKPQVNDELDTQNFMKFEEMDNAPTRTGSGPSRKMMLNSKDLSFVGYTYKNFDAVKGLKH
SDCPLEKPFEISRGFKGVS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017