Detail information of Os03g0328900_circ_ag.1


General Information
CircRNA Name Os03g0328900_circ_ag.1
ID in PlantcircBase osa_circ_019613
Alias Os_ciR342
Organism Oryza sativa
Position chr3: 12048533-12069705  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0328900_circ_g.1 Os03g0328900_circ_ag.2 Os03g0328900_circ_g.3 Os03g0328900_circ_g.4
Support reads 157/7
Tissues root/seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGATTTCGCCAGCATGATGAACCCCGGGTCGCGCCAGATTTACCTCACCTTCCCGGCCGACAG
CACGTTCCGCGAGGAGGACGTCTCCAACTACTTCAGcatctacggtccggtgcacgacgtgcgc
atcccgtaccagcagaagcgcatgttcgggttcgtcaccttcgtgtaccctgagacggtgaagc
tgatcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.493156701
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919 osa-miR156j-3p osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017