Detail information of BGIOSGA033133_circ_g.1


General Information
CircRNA Name BGIOSGA033133_circ_g.1
ID in PlantcircBase osi_circ_008517
Alias Chr10:19613687_19614721(MH63RS2), Chr10:20067257_20068291(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16654185-16655219  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033133
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033133_circ_g.2 BGIOSGA033133_circ_g.3 BGIOSGA033133_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033133-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGGGAGGTGGTGGGATTGTGAATTGGCTAAGTGATGAAATGAACTCTCAACAAGACTTTATC
CCAAGCTTCCTTGAGCTGCTAACTGTTTTGCCACAGggtagctgacagcttacttcatgatgaa
agtagtaatatggagactcaaatcttctgctctcaaaccctcagaagcaaggtaaataaattga
tatgtatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGCTGACAGCTTACTTCATGATGAAAGTAGTAATATGGAGACTCAAATCTTCTGCTCTCAA
ACCCTCAGAAGCAAGGTAAATAAATTGATATGTATCACTGCTTCTCTTCTAATTATTTAAAAAA
CTCTGAAATTGGTCTAATTCTTCCTGTTGTCTTTTAAATTATCCCAATACCAGGTACAAAGGGA
CTTTGAAGAATTACCTTCAGAAGCTTTCCGTCCGTTACAAGATTCTCTATATGTAAGCACCAGT
TTTTGAAGTTCTTGCTTTTCTTTTCTTATTAGCATATTATAATCAGTTCAACTAAATGTTGTAT
CAAGTAGAATCAGTCTTCTATTTGGCTGCCATTTCTGTTTGATAATAGGCGTTATTTCACTTGC
TCAAAATAAAATAAAACCAATTTTTCAAAGTTATGTCATGTCATGTTCAGTGATGGATTTGTTT
ACCTTTAGTAGTAAGATTTGGATAATCTTGTGAAGATCTTGTTTTGTTTCATTTAACTGTGATG
TATCTGCAGGCATTGCTGAAAAAATTTAGTAAAGGACCACAAAAAGTTAGAACACAGGTAATCT
ATACTACCTCCATTCCTTTGTACTTGTCATTTAGGATATTGATACAATCACCAGTACACAATTT
TGACTTATACCTTTTGTAATTATATACTCACAGCATACTAAAAATATAATCATATTAGTAGCAA
AAAAAAATATTAGTAGCAAAAAAATCTTAATACGGTCGTGTATATTAGTAGCAAAAAAAAATAT
ATCAAAGTTTGATTGCACACATTCTAAGACCACATTTATTTGAGTATATAGCTTGTAATTAAGC
AATCAATTTTGTATTTCACAGTTATAATGGCAAACTACCTTTTGTGCCATCTTCAGATTTGCAT
TGCAATGGCTGCTCTTGCGGTGCATGTACCTGTAGAGGACTGGGGAGGTGGTGGGATTGTGAAT
TGGCTAAGTGATGAAATGAACTCTCAACAAGACTTTATCCCAAGCTTCCTTGAGCTGCTAACTG
TTTTGCCACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021