Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G20020_circ_g.10 |
ID in PlantcircBase | ath_circ_003491 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 6944164-6944241 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G20020 |
Parent gene annotation |
Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G20020_circ_g.2 AT1G20020_circ_g.3 AT1G20020_circ_g.4 AT1G20020_circ_g.5 AT1G20020_circ_g.6 AT1G20020_circ_g.7 AT1G20020_circ_g.8 AT1G20020_circ_g.9 AT1G20020_circ_g.11 AT1G20020_circ_g.12 AT1G20020_circ_g.13 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G20020.2:1 AT1G20020.3:1 AT1G20020.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.364321793 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6944212-6944238(+) 6944228-6944238(+) |
Potential amino acid sequence |
MFFEKHDDYKLATGTGIAPFRSFLWKMFFEKHDDYKLATGTGIAPFRSFLWKMFFEKHDDYKLA TGTGIAPFRSFLWKMFFEKHDDYK(+) MMTTSLPQGQELLLSGLSYGRCSLRNMMTTSLPQGQELLLSGLSYGRCSLRNMMTTSLPQGQEL LLSGLSYGRCSLRNMMTT(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |