Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G20020_circ_g.11 |
ID in PlantcircBase | ath_circ_003492 |
Alias | 1:6944164-6944381 |
Organism | Arabidpsis thaliana |
Position | chr1: 6944164-6944381 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G20020 |
Parent gene annotation |
Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G20020_circ_g.2 AT1G20020_circ_g.3 AT1G20020_circ_g.4 AT1G20020_circ_g.5 AT1G20020_circ_g.6 AT1G20020_circ_g.7 AT1G20020_circ_g.8 AT1G20020_circ_g.9 AT1G20020_circ_g.10 AT1G20020_circ_g.12 AT1G20020_circ_g.13 |
Support reads | 3 |
Tissues | flower |
Exon boundary | Yes-Yes |
Splicing signals | GC-AG |
Number of exons covered | AT1G20020.2:2 AT1G20020.3:2 AT1G20020.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.250928141 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |