Detail information of AT4G28025_circ_g.3


General Information
CircRNA Name AT4G28025_circ_g.3
ID in PlantcircBase ath_circ_033257
Alias NA
Organism Arabidpsis thaliana
Position chr4: 13936260-13936505  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT4G28025
Parent gene annotation Putative uncharacterized protein At4g28025
Parent gene strand -
Alternative splicing AT4G28025_circ_g.1 AT4G28025_circ_g.2
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT4G28025.2:2
AT4G28025.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAGATAGCAAAATCTATAACTGCAAAAAAAGGTTAATGTTATACATTTGGGTTCGCTAGGAC
TCGTACTACTCCAACTCTGGCTCTGTTGCCCACCAActttgcttttcctggaggaggaggagga
gatacctacaagaacactcagcatgtcagtaagtttaaaccaatggtcatatcatatcaaccaa
caagaaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 87
Transcript exons: 13936260-13936505
CTTTGCTTTTCCTGGAGGAGGAGGAGGAGATACATTTGGGTTCGCTAGGACTCGTACTACTCCA
ACTCTGGCTCTGTTGCCCACCAA

Genomic sequence CTTTGCTTTTCCTGGAGGAGGAGGAGGAGATACCTACAAGAACACTCAGCATGTCAGTAAGTTT
AAACCAATGGTCATATCATATCAACCAACAAGAAGATCAAACATGACATGAGTATGACTTGGTG
TCCTGAACGAAAACACTACTAAGATAGCAAAATCTATAACTGCAAAAAAAGGTTAATGTTATAC
ATTTGGGTTCGCTAGGACTCGTACTACTCCAACTCTGGCTCTGTTGCCCACCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.163645256
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017