Plant Circular RNA Database

Detail information of Os07g0187700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0187700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_033062
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 4683820-4685745  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0187700						
					
						Parent gene annotation
						
							WD40 protein, Regulation of the plasma membrane localization of 
phosphate transporters, Phosphate uptake and translocation (Os07
t0187700-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0187700_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0187700-01:6

General Information
CircRNA Name	Os07g0187700_circ_g.1
ID in PlantcircBase	osa_circ_033062
Alias	NA
Organism	Oryza sativa
Position	chr7: 4683820-4685745 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0187700
Parent gene annotation	WD40 protein, Regulation of the plasma membrane localization of phosphate transporters, Phosphate uptake and translocation (Os07 t0187700-01)
Parent gene strand	+
Alternative splicing	Os07g0187700_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0187700-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTGTGCTGTGGATGTAAAGAAGATGGATGTTTCTCACTGGAGCAAGAAGGTCCATCTTGGTTC
TCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgctattcaagctgatttttgaagagttc
actgttcgacttatttcaagagacgctccaccacttgaatccgttggaccgcagaagtgtcttg
cttttagc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 639
Transcript exons: 4683820-4683952,4684319-4684410,4684705-4684804,4684892-
4684964,4685046-4685166,4685626-4685745
GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGACGCTCCACCACTT
GAATCCGTTGGACCGCAGAAGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTG
GTGAGGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAA
GGCTCATAAGTCCTTCCGGGACATGGATATCAGCTTAGATTCAGAATTTTTAGTTTCCACATCC
ACTGATGGTTCTGCAAGAATATGGAAGATAGATGAGGGGGTACCATTGGTCAATTTGACTCGAT
CTGCGGATGAGAAGATTGAATGTTGCCGCTTTTCTAGGGATGGCATGAAACCATTCCTGTTTTG
CACCGTTGCAAAAGGTAACAAAGTTGTAACTGTTGTCTGGAACATAAGTGACTGGAGTCGAATT
GGATACAAGAGACTTCTGGGAAAACCTATCTCCACACTTTCAGTTAGCATGGATGGGAAGTATC
TGGCTTTGGGGAGCCATGATGGTGATTTCTGTGCTGTGGATGTAAAGAAGATGGATGTTTCTCA
CTGGAGCAAGAAGGTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG
						
					

						Genomic sequence
						
							GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGACGCTCCACCACTT
GAATCCGTTGGACCGCAGAAGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTG
GTGAGGTATCGGATTGCTATATGTTGATATTGGAGTTTTACTGATCAGTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTATTTTCTAGTTTGCTTCTATTTGGTGATTATGTGTTTCCATATGCTGCAT
TTATACATCGTTAAGAAGTACTATATGTGTATTATAGAAGCCATGTGATTTTAGGCACAATATC
CACTGTTGTACCATTCTGTCAGATTATTCCATCCAGAATTCCAGATGGTTCAGTTTTTTATGGT
CTGGTGTTATTGCCCAGTGTATTTAGTTTGATAATAATGCTGCTCTCTAGCTGAACTTGTACAA
AGTATCTTTCTATGGTTCTTACAATGCTTTATTTTATTTTTACCACTATAGGATGGGCATCTCA
GAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAAGGCTCATAAGTCCTTCCG
GGACATGGATATCAGGTTAGGGCAAGTGCAAGCATAATTATTTTCCTTTATTATTTGCAAAAGA
ATCCCAGGATATTCTCATCTGTTGAACAAGTGTTGTTGTAAATGGCGCAATCATGTAGCCGTTA
TCTTGAGAGAGTAACCAAGAACTTTGATAACGTAGCAGTAGTGTTGGTCCAAACCTTAATGAAG
CATTTTGGTCTTGGAAGACTCTTTTTTAGACCGAAGCGATTCTTTGAACCTTTGGTTTTCGTCC
CTGTGCTTTATTGTGAATTGACTTTTGCAATACTGCTGCTTTTCCTCTTGTAGCTTAGATTCAG
AATTTTTAGTTTCCACATCCACTGATGGTTCTGCAAGAATATGGAAGATAGATGAGGGGGTACC
ATTGGTCAATTTGACTCGATCTGCGGTATGATGCGATAAATTTGTGCAAGTCATGTTCTCTTGT
TGAGATACTGAAAGCCTTAACCATTTGGTGTTCTGGTTTTCTATGCAGGATGAGAAGATTGAAT
GTTGCCGCTTTTCTAGGGATGGCATGAAACCATTCCTGTTTTGCACCGTTGCAAAAGGTATACT
TTCTATTGTGGTCCAGAAATAGATTTATGCATATCAGATGATTTTTCTATATATGTGCTTTGTC
ATTGGAACAGGTAACAAAGTTGTAACTGTTGTCTGGAACATAAGTGACTGGAGTCGAATTGGAT
ACAAGAGACTTCTGGGAAAACCTATCTCCACACTTTCAGTTAGCATGGATGGGAAGTATCTGGC
TTTGTAAGTACATATAAATACTGTTGATCTTATCATACTGAACAAGTATATAACTCCATTGCAT
TTCTAGGAACATTTACAATGCCAAATTTCAAGACTAACATAAGCTACTTTCTCCTAGTAACTTC
ACTATTTTGTCCTTTTTGAAGAGCTCAAAAACTTGCTTGCATTTTTTTGTTACATTCTCACATT
GACATGTAATATATCAACAACTTGAAACAACTGTCACATAAATAATAACAAAGAATTACTCTAG
TTGACAAGGATGTTGCGTAGCTCTGAAAAAAATGGACGAAAAACATTAACATTATAAATTGTAA
TAGTGACAGTATCAGCTGGAGTAATGTTTTTTTCCTAATAAATATGCAGTGCCCCAATACTAGC
TAACATATTCTAAACTGAATTGCTTTTGATGTATTTAGTGCACCGACATGTGAATGAATTCTGT
ATTTCTTCTTTCAGGGGGAGCCATGATGGTGATTTCTGTGCTGTGGATGTAAAGAAGATGGATG
TTTCTCACTGGAGCAAGAAGGTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTAC
TGAAAG
						
					

			
		

Sequences
Splice junction sequence	TCTGTGCTGTGGATGTAAAGAAGATGGATGTTTCTCACTGGAGCAAGAAGGTCCATCTTGGTTC TCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgctattcaagctgatttttgaagagttc actgttcgacttatttcaagagacgctccaccacttgaatccgttggaccgcagaagtgtcttg cttttagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 639 Transcript exons: 4683820-4683952,4684319-4684410,4684705-4684804,4684892- 4684964,4685046-4685166,4685626-4685745 GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGACGCTCCACCACTT GAATCCGTTGGACCGCAGAAGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTG GTGAGGATGGGCATCTCAGAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAA GGCTCATAAGTCCTTCCGGGACATGGATATCAGCTTAGATTCAGAATTTTTAGTTTCCACATCC ACTGATGGTTCTGCAAGAATATGGAAGATAGATGAGGGGGTACCATTGGTCAATTTGACTCGAT CTGCGGATGAGAAGATTGAATGTTGCCGCTTTTCTAGGGATGGCATGAAACCATTCCTGTTTTG CACCGTTGCAAAAGGTAACAAAGTTGTAACTGTTGTCTGGAACATAAGTGACTGGAGTCGAATT GGATACAAGAGACTTCTGGGAAAACCTATCTCCACACTTTCAGTTAGCATGGATGGGAAGTATC TGGCTTTGGGGAGCCATGATGGTGATTTCTGTGCTGTGGATGTAAAGAAGATGGATGTTTCTCA CTGGAGCAAGAAGGTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG
Genomic sequence	GCTATTCAAGCTGATTTTTGAAGAGTTCACTGTTCGACTTATTTCAAGAGACGCTCCACCACTT GAATCCGTTGGACCGCAGAAGTGTCTTGCTTTTAGCACTGATGGATCTAAATTTGCCATTGGTG GTGAGGTATCGGATTGCTATATGTTGATATTGGAGTTTTACTGATCAGTTCTCTCTCTCTCTCT CTCTCTCTCTCTCTATTTTCTAGTTTGCTTCTATTTGGTGATTATGTGTTTCCATATGCTGCAT TTATACATCGTTAAGAAGTACTATATGTGTATTATAGAAGCCATGTGATTTTAGGCACAATATC CACTGTTGTACCATTCTGTCAGATTATTCCATCCAGAATTCCAGATGGTTCAGTTTTTTATGGT CTGGTGTTATTGCCCAGTGTATTTAGTTTGATAATAATGCTGCTCTCTAGCTGAACTTGTACAA AGTATCTTTCTATGGTTCTTACAATGCTTTATTTTATTTTTACCACTATAGGATGGGCATCTCA GAATATTTCATTGGCCGAGCATGAATGTGCTCTTAGATGAACCCAAGGCTCATAAGTCCTTCCG GGACATGGATATCAGGTTAGGGCAAGTGCAAGCATAATTATTTTCCTTTATTATTTGCAAAAGA ATCCCAGGATATTCTCATCTGTTGAACAAGTGTTGTTGTAAATGGCGCAATCATGTAGCCGTTA TCTTGAGAGAGTAACCAAGAACTTTGATAACGTAGCAGTAGTGTTGGTCCAAACCTTAATGAAG CATTTTGGTCTTGGAAGACTCTTTTTTAGACCGAAGCGATTCTTTGAACCTTTGGTTTTCGTCC CTGTGCTTTATTGTGAATTGACTTTTGCAATACTGCTGCTTTTCCTCTTGTAGCTTAGATTCAG AATTTTTAGTTTCCACATCCACTGATGGTTCTGCAAGAATATGGAAGATAGATGAGGGGGTACC ATTGGTCAATTTGACTCGATCTGCGGTATGATGCGATAAATTTGTGCAAGTCATGTTCTCTTGT TGAGATACTGAAAGCCTTAACCATTTGGTGTTCTGGTTTTCTATGCAGGATGAGAAGATTGAAT GTTGCCGCTTTTCTAGGGATGGCATGAAACCATTCCTGTTTTGCACCGTTGCAAAAGGTATACT TTCTATTGTGGTCCAGAAATAGATTTATGCATATCAGATGATTTTTCTATATATGTGCTTTGTC ATTGGAACAGGTAACAAAGTTGTAACTGTTGTCTGGAACATAAGTGACTGGAGTCGAATTGGAT ACAAGAGACTTCTGGGAAAACCTATCTCCACACTTTCAGTTAGCATGGATGGGAAGTATCTGGC TTTGTAAGTACATATAAATACTGTTGATCTTATCATACTGAACAAGTATATAACTCCATTGCAT TTCTAGGAACATTTACAATGCCAAATTTCAAGACTAACATAAGCTACTTTCTCCTAGTAACTTC ACTATTTTGTCCTTTTTGAAGAGCTCAAAAACTTGCTTGCATTTTTTTGTTACATTCTCACATT GACATGTAATATATCAACAACTTGAAACAACTGTCACATAAATAATAACAAAGAATTACTCTAG TTGACAAGGATGTTGCGTAGCTCTGAAAAAAATGGACGAAAAACATTAACATTATAAATTGTAA TAGTGACAGTATCAGCTGGAGTAATGTTTTTTTCCTAATAAATATGCAGTGCCCCAATACTAGC TAACATATTCTAAACTGAATTGCTTTTGATGTATTTAGTGCACCGACATGTGAATGAATTCTGT ATTTCTTCTTTCAGGGGGAGCCATGATGGTGATTTCTGTGCTGTGGATGTAAAGAAGATGGATG TTTCTCACTGGAGCAAGAAGGTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTAC TGAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017605 						
					
						PMCS
						0.351956494

Conservation Information
Conserved circRNAs	osi_circ_017605
PMCS	0.351956494

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4684353-4685742(+)
4685674-4683830(+)
4683944-4685682(-)
						
						Potential amino acid sequence
						
							MNVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSR
DGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAV
DVKKMDVSHWSKKVHLGSPVSSIEFCPTERLFKLIFEEFTVRLISRDAPPLESVGPQKCLAFST
DGSKFAIGGEDGHLRIFHWPSMNVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEG
VPLVNLTRSADEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTL
SVSMDGKYLALGSHDGDFCAVDVKKMDVSHWSKKVHLGSPVSSIEFCPTERLFKLIFEEFTVRL
ISRDAPPLESVGPQKCLAFSTDGSKFAIGGEDGHLRIFHWPSMNVLLDEPKAHKSFRDMDISLD
SEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVW
NISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAVDVKKMDVSHWSKKVHLGSPVSS
IEFCPTERLFKLIFEEFTVRLISRDAPPLESVGPQKCLAFSTDGSKFAIGGEDGHLRIFHWPSM
NVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSRD
GMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAVD
VKKMDVSHWSKKVHLGSPVSSIEFCPTE(+)
MFLTGARRSILVLRFPQLNFVLLKGYSS*(+)
MANLDPSVLKARHFCGPTDSSGGASLEISRTVNSSKISLNSLSVGQNSIEETGEPRWTFLLQ*(
-)
						
						Sponge-miRNAs
						
							osa-miR5497 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4684353-4685742(+) 4685674-4683830(+) 4683944-4685682(-)
Potential amino acid sequence	MNVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSR DGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAV DVKKMDVSHWSKKVHLGSPVSSIEFCPTERLFKLIFEEFTVRLISRDAPPLESVGPQKCLAFST DGSKFAIGGEDGHLRIFHWPSMNVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEG VPLVNLTRSADEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTL SVSMDGKYLALGSHDGDFCAVDVKKMDVSHWSKKVHLGSPVSSIEFCPTERLFKLIFEEFTVRL ISRDAPPLESVGPQKCLAFSTDGSKFAIGGEDGHLRIFHWPSMNVLLDEPKAHKSFRDMDISLD SEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSRDGMKPFLFCTVAKGNKVVTVVW NISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAVDVKKMDVSHWSKKVHLGSPVSS IEFCPTERLFKLIFEEFTVRLISRDAPPLESVGPQKCLAFSTDGSKFAIGGEDGHLRIFHWPSM NVLLDEPKAHKSFRDMDISLDSEFLVSTSTDGSARIWKIDEGVPLVNLTRSADEKIECCRFSRD GMKPFLFCTVAKGNKVVTVVWNISDWSRIGYKRLLGKPISTLSVSMDGKYLALGSHDGDFCAVD VKKMDVSHWSKKVHLGSPVSSIEFCPTE(+) MFLTGARRSILVLRFPQLNFVLLKGYSS(+) MANLDPSVLKARHFCGPTDSSGGASLEISRTVNSSKISLNSLSVGQNSIEETGEPRWTFLLQ( -)
Sponge-miRNAs	osa-miR5497
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0187700_circ_g.1

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