Plant Circular RNA Database

Detail information of AT1G05520_circ_g.6

			
						 General Information
					
						CircRNA Name
						AT1G05520_circ_g.6
					
						ID in PlantcircBase
						ath_circ_000822
					
						Alias
						At_ciR367, AT1G05520_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 1631579-1631842  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, CIRI-full, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ, CIRI2
					
						Parent gene
						
							AT1G05520						
					
						Parent gene annotation
						
							At1g05520/T25N20_16
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT1G05520_circ_g.1 AT1G05520_circ_g.2 AT1G05520_circ_g.3 AT1G05520_circ_g.4 AT1G05520_circ_g.5 						
					
						Support reads
						10/23/2
					
						Tissues
						leaf/root, leaf, aerial, inflorescences, whole_plant/seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G05520.1:1

General Information
CircRNA Name	AT1G05520_circ_g.6
ID in PlantcircBase	ath_circ_000822
Alias	At_ciR367, AT1G05520_C1
Organism	Arabidpsis thaliana
Position	chr1: 1631579-1631842 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, CIRI-full, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ, CIRI2
Parent gene	AT1G05520
Parent gene annotation	At1g05520/T25N20_16
Parent gene strand	-
Alternative splicing	AT1G05520_circ_g.1 AT1G05520_circ_g.2 AT1G05520_circ_g.3 AT1G05520_circ_g.4 AT1G05520_circ_g.5
Support reads	10/23/2
Tissues	leaf/root, leaf, aerial, inflorescences, whole_plant/seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G05520.1:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCG
GTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACACctggtgttcaggctgattttgatatccc
aagttgcgccactgtgcaatggtcattccatggaaaacgacaacactaatgtaagaatccaaca
ggaggata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 184
Transcript exons: 1631579-1631631,1631712-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCAGCAGGTTGAGG
TAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTT
TCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 197
Transcript exons: 1631579-1631661,1631729-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGC
GTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTG
AACAC
Transcript length: 200
Transcript exons: 1631579-1631680,1631745-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTTAGAGATGGCTGAATCATAACAGC
TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG
TTGAACAC
Transcript length: 217
Transcript exons: 1631579-1631722,1631770-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAG
TTTCGTCTGGACTATTGTTGAACAC
Transcript length: 224
Transcript exons: 1631579-1631681,1631722-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGGTAGTGAGTTAAACGAATATGTTGT
TAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTG
TAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 226
Transcript exons: 1631579-1631683,1631722-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCGTAGTGAGTTAAACGAATATGTT
GTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGT
TGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 228
Transcript exons: 1631579-1631635,1631672-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCGAGGATA
CGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATG
TTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCG
GTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 239
Transcript exons: 1631579-1631762,1631788-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCCTCGGTTT
AATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 241
Transcript exons: 1631579-1631641,1631665-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAC
CAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAG
TTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGT
TTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 243
Transcript exons: 1631579-1631680,1631702-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGATCCAACAATGCAGGTTGAGGTAGTG
AGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCG
GTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Transcript length: 258
Transcript exons: 1631579-1631722,1631729-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTT
CGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAAC
AC
Transcript length: 264
Transcript exons: 1631579-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC
TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG
TTGAACAC
Transcript length: 1320
Transcript exons: 1631579-1631842
CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC
TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG
TTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAGTGGTCATTC
CATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGC
AACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATC
ATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTG
GACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAAT
GGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCA
ATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATG
GCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGT
TTCGTCTGGACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCAC
TGTGCAATGGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGT
CTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGT
TAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTG
TAAGCAGTTTCGTCTGGACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGT
TGCGCCACTGTGCAATGGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAG
GATACGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAA
TATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCA
TGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
						
					

						Genomic sequence
						
							CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA
ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA
ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC
TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG
TTGAACAC
						
					

			
		

Sequences
Splice junction sequence	TTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCG GTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACACctggtgttcaggctgattttgatatccc aagttgcgccactgtgcaatggtcattccatggaaaacgacaacactaatgtaagaatccaaca ggaggata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 184 Transcript exons: 1631579-1631631,1631712-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCAGCAGGTTGAGG TAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTT TCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 197 Transcript exons: 1631579-1631661,1631729-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGC GTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTG AACAC Transcript length: 200 Transcript exons: 1631579-1631680,1631745-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTTAGAGATGGCTGAATCATAACAGC TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG TTGAACAC Transcript length: 217 Transcript exons: 1631579-1631722,1631770-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAG TTTCGTCTGGACTATTGTTGAACAC Transcript length: 224 Transcript exons: 1631579-1631681,1631722-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGGTAGTGAGTTAAACGAATATGTTGT TAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTG TAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 226 Transcript exons: 1631579-1631683,1631722-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCGTAGTGAGTTAAACGAATATGTT GTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGT TGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 228 Transcript exons: 1631579-1631635,1631672-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCGAGGATA CGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATG TTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCG GTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 239 Transcript exons: 1631579-1631762,1631788-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCCTCGGTTT AATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 241 Transcript exons: 1631579-1631641,1631665-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAC CAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAG TTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGT TTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 243 Transcript exons: 1631579-1631680,1631702-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGATCCAACAATGCAGGTTGAGGTAGTG AGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCG GTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC Transcript length: 258 Transcript exons: 1631579-1631722,1631729-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTT CGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAAC AC Transcript length: 264 Transcript exons: 1631579-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG TTGAACAC Transcript length: 1320 Transcript exons: 1631579-1631842 CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG TTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAGTGGTCATTC CATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGC AACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATC ATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTG GACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAAT GGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCA ATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATG GCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGT TTCGTCTGGACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCAC TGTGCAATGGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGT CTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGT TAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTG TAAGCAGTTTCGTCTGGACTATTGTTGAACACCTGGTGTTCAGGCTGATTTTGATATCCCAAGT TGCGCCACTGTGCAATGGTCATTCCATGGAAAACGACAACACTAATGTAAGAATCCAACAGGAG GATACGGTCTGCACCAATGGAAGCAACATCCAACAATGCAGGTTGAGGTAGTGAGTTAAACGAA TATGTTGTTAGAGATGGCTGAATCATAACAGCTGCGTTCGAAATATTTTCTCGGTTTAATAGCA TGCGGTTGTAAGCAGTTTCGTCTGGACTATTGTTGAACAC
Genomic sequence	CTGGTGTTCAGGCTGATTTTGATATCCCAAGTTGCGCCACTGTGCAATGGTCATTCCATGGAAA ACGACAACACTAATGTAAGAATCCAACAGGAGGATACGGTCTGCACCAATGGAAGCAACATCCA ACAATGCAGGTTGAGGTAGTGAGTTAAACGAATATGTTGTTAGAGATGGCTGAATCATAACAGC TGCGTTCGAAATATTTTCTCGGTTTAATAGCATGCGGTTGTAAGCAGTTTCGTCTGGACTATTG TTGAACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.941044222

Conservation Information
Conserved circRNAs	NA
PMCS	0.941044222

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1631804-1631581(-)
						
						Potential amino acid sequence
						
							MLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWR
NLGYQNQPEHQVFNNSPDETAYNRMLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGA
DRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQVFNNSPDETAYNRMLLNRENISNAAVMIQ
PSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQVFNNS
PDETAYNRMLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFH
GMTIAQWRNLGYQNQPEHQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	Y
Potential coding position	1631804-1631581(-)
Potential amino acid sequence	MLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWR NLGYQNQPEHQVFNNSPDETAYNRMLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGA DRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQVFNNSPDETAYNRMLLNRENISNAAVMIQ PSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQVFNNS PDETAYNRMLLNRENISNAAVMIQPSLTTYSFNSLPQPALLDVASIGADRILLLDSYISVVVFH GMTIAQWRNLGYQNQPEHQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT1G05520_circ_g.6

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