Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05520_circ_g.5 |
ID in PlantcircBase | ath_circ_000821 |
Alias | Chr1:1631578|1631842 |
Organism | Arabidpsis thaliana |
Position | chr1: 1631578-1631842 JBrowse» |
Reference genome | TAIR10.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G05520 |
Parent gene annotation |
At1g05520/T25N20_16 |
Parent gene strand | - |
Alternative splicing | AT1G05520_circ_g.1 AT1G05520_circ_g.2 AT1G05520_circ_g.3 AT1G05520_circ_g.4 AT1G05520_circ_g.6 |
Support reads | 7 |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | AT1G05520.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.172640409 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
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References | Zhang et al., 2020 |