Detail information of BGIOSGA035095_circ_igg.1


General Information
CircRNA Name BGIOSGA035095_circ_igg.1
ID in PlantcircBase osi_circ_009489
Alias Chr11:9374972_9375809(ZS97RS2), Chr11:9456257_9457094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7674864-7675701  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035095_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGGATCTACTATCTCAAATACTGGGGAATGGTAGCCCCATGTGCTTTGATGAACAGCGACT
CATTGACAAGCTTCGGGAGTTCCTAAAAGATAAGAGgctagatgatggtgggagcaacggtttc
agcttcagcgggggtgatgaactctctgcttgggaagctctccaccttgctggacaaagagtat
acaaagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTAGATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAA
GCTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTC
CTGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTG
ATGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCAT
TGATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATG
AGTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTG
AACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCAC
ATCTGGAACCACAACCAGTGATTTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTA
GATGAGCTTGTAGGAATCAAGGGTCCAAGGGATTGTATAATCAAGTTGCTAACTTATGAAGCTG
ATAGTGGCCCATCAAGACAGCAACTCAAAGTAGTGTCCATTGTGGGATGTGGAGGTCTGGGCAA
GACAACACTTGCCAATCAAGTCTATAAGGAAATCAATGGCCAATTTGATTGTAAGGCTTTTGTG
TCTATGTCCCAGAAACCAGACATGAGGAAGATCTTAATGGATCTACTATCTCAAATACTGGGGA
ATGGTAGCCCCATGTGCTTTGATGAACAGCGACTCATTGACAAGCTTCGGGAGTTCCTAAAAGA
TAAGAG
Conservation Information
Conserved circRNAs osa_circ_009035
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021