Detail information of Os11g0266500_circ_g.1


General Information
CircRNA Name Os11g0266500_circ_g.1
ID in PlantcircBase osa_circ_009035
Alias Os_ciR2827
Organism Oryza sativa
Position chr11: 9146399-9147234  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0266500
Parent gene annotation Similar to NB-ARC domain containing protein, expressed. (Os11t02
66500-01);Conserved hypothetical protein. (Os11t0266500-02)
Parent gene strand +
Alternative splicing NA
Support reads 4/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0266500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGGATCTACTATCTCAAATACTGGGGAATGGTAGCCCCATGTGCTTTGATGAACAGCGACT
CATTGACAAGCTTCGGGAGTTCCTAAAAGATAAGAGctagatgatggtgggagcaacggtttca
gcttcagcgggggtgatgaactctctgcttgggaagctctccaccttgctggacaaagagtata
caaagcac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 836
Transcript exons: 9146399-9147234
CTAGATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAAG
CTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTCC
TGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTGA
TGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCATT
GATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATGA
GTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTGA
ACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCACA
TCTGGAACCACAACCAGTGATTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTAGA
TGAGCTTGTAGGAATCAAGGGTCCAAGGGATTGTATAATCAAGTTGCTAACTTATGAAGCTGAT
AGTGGCCCATCAAGACAGCAACTCAAAGTAGTGTCCATTGTGGGATGTGGAGGTCTGGGCAAGA
CAACACTTGCCAATCAAGTCTATAAGGAAATCAATGGCCAATTTGATTGTAAGGCTTTTGTGTC
TATGTCCCAGAAACCAGACATGAGGAAGATCTTAATGGATCTACTATCTCAAATACTGGGGAAT
GGTAGCCCCATGTGCTTTGATGAACAGCGACTCATTGACAAGCTTCGGGAGTTCCTAAAAGATA
AGAG

Genomic sequence CTAGATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAAG
CTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTCC
TGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTGA
TGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCATT
GATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATGA
GTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTGA
ACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCACA
TCTGGAACCACAACCAGTGATTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTAGA
TGAGCTTGTAGGAATCAAGGGTCCAAGGGATTGTATAATCAAGTTGCTAACTTATGAAGCTGAT
AGTGGCCCATCAAGACAGCAACTCAAAGTAGTGTCCATTGTGGGATGTGGAGGTCTGGGCAAGA
CAACACTTGCCAATCAAGTCTATAAGGAAATCAATGGCCAATTTGATTGTAAGGCTTTTGTGTC
TATGTCCCAGAAACCAGACATGAGGAAGATCTTAATGGATCTACTATCTCAAATACTGGGGAAT
GGTAGCCCCATGTGCTTTGATGAACAGCGACTCATTGACAAGCTTCGGGAGTTCCTAAAAGATA
AGAG
Conservation Information
Conserved circRNAs osi_circ_003104* osi_circ_009489
PMCS 0.324705333
Functional Information
Coding potential Y
Potential coding position 9147105-9146399(+)
9146636-9147200(-)
Potential amino acid sequence MSQKPDMRKILMDLLSQILGNGSPMCFDEQRLIDKLREFLKDKS*(+)
MPALSTHSPRPSIEHQARPALHVSAAQPPCWVAPFAGTSHPFPHFCALYTLCPARWRASQAESS
SPPLKLKPLLPPSSSSYLLGTPEACQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017