Detail information of AT2G03510_circ_g.3


General Information
CircRNA Name AT2G03510_circ_g.3
ID in PlantcircBase ath_circ_012683
Alias 2:1068303-1068517
Organism Arabidpsis thaliana
Position chr2: 1068303-1068517  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03510
Parent gene annotation Expressed protein
Parent gene strand +
Alternative splicing AT2G03510_circ_g.2 AT2G03510_circ_g.4
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03510.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGTTGACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGA
CCGTCAAAAGAGTCTCGCGGATGCAGATTACTACCGgtcttgattgctattgagaaacaaagag
ttgctgagaaagaggcagagacaaagaaaataatggccattagtgaagctgagaagaacgccaa
tgtaagca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 215
Transcript exons: 1068303-1068517
GTCTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAATGG
CCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTTGACTGA
GAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCGTCAAAAGAGT
CTCGCGGATGCAGATTACTACCG

Genomic sequence GTCTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAATGG
CCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTTGACTGA
GAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCGTCAAAAGAGT
CTCGCGGATGCAGATTACTACCG
Conservation Information
Conserved circRNAs NA
PMCS 0.471554303
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020