Detail information of AT2G03510_circ_g.4


General Information
CircRNA Name AT2G03510_circ_g.4
ID in PlantcircBase ath_circ_012684
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1068329-1068421  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G03510
Parent gene annotation Expressed protein
Parent gene strand +
Alternative splicing AT2G03510_circ_g.2 AT2G03510_circ_g.3
Support reads 5
Tissues root, leaf, aerial
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03510.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAagttgctgagaaagaggc
agagacaaagaaaataatggccattagtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAATGGCCATTAGTGAAGCTGAGAAGAACGCC
AATGTAAGCAAGATTCTGATGCAACAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.351866763
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017