Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_039626
Alias NA
Organism Arabidpsis thaliana
Position chr5: 7169751-7174551  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G21105_circ_g.1 AT5G21105_circ_g.2 AT5G21105_circ_g.3 AT5G21105_circ_g.4 AT5G21105_circ_g.5 AT5G21105_circ_g.6
Support reads 14
Tissues aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGTGCGCCCCACAGATACTCCACGTGGAGCCGAACAAGACTTACCGAATCAGACTCTCCAGC
ACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGggacaccagctggtggttgttgaagctg
acggcaactacgtcgcaccgttcaccgtcaacgacattgacgtttattccggcgaaacttattc
tgttctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACACCAGCTGGTGGTTGTTGAAGCTGACGGCAACTACGTCGCACCGTTCACCGTCAACGACA
TTGACGTTTATTCCGGCGAAACTTATTCTGTTCTCCTTAAAACCAACGCACTTCCATCAAAGAA
GTACTGGATCTCCGTCGGCGTTCGTGGCCGAGAACCCAAAACTCCTCAAGCACTCACCGTGATA
AATTACGTTGATGCCACTGAGTCACGCCCATCTCATCCACCACCGGTGACTCCAATCTGGAACG
ACACAGATCGGAGCAAAAGCTTCTCGAAGAAGATCTTCGCCGCTAAAGGATATCCAAAACCGCC
GGAGAAATCACATGACCAGCTAATCCTCCTCAACACACAGAATCTCTACGAAGATTACACGAAA
TGGTCAATCAACAACGTCTCATTATCCGTACCGGTGACGCCGTACCTCGGATCAATTAGATACG
GTTTAAAATCGGCGTACGATTTGAAATCGCCGGCGAAGAAGTTAATTATGGATAATTACGATAT
CATGAAACCGCCGCCGAATCCAAACACAACGAAAGGTAGCGGGATTTACAATTTCGCGTTTGGA
ATCGTCGTCGACGTGATTCTTCAAAACGCTAATGTTTTAAAAGGTGTGATTAGTGAGATTCATC
CGTGGCATATTCATGGTCATGATTTCTGGGTTTTGGGTTACGGTGAAGGGAAATTTAAACCGGG
GATTGATGAGAAGACGTTTAATTTGAAGAATCCGCCGTTACGGAATACGGTGGTGTTGTATCCG
TTTGGATGGACGGCGATAAGGTTTGTGACGGATAATCCAGGGGTTTGGTTTTTTCATTGTCATA
TTGAACCGCATTTGCATATGGGTATGGGTGTGGTTTTCGTGGAGGGAGTAGACCGGATTGGTAA
GATGGAGATACCGGATGAAGCGCTTGGTTGTGGATTAACCAGGAAATGGCTTATGAACCGGGGA
CGCCCTTAAATGAACCGGGGTTGGTATGTGTGTTTATTTTCCTCGTTGGGTTTCTTAATTTTTT
AAAGGGATAAAAATAAGGATGTTCTAATTGATAGGATCAAAGAAAATATGTTTAATTCTCTTGT
TGGGGGACAAGATCTCTTTCTAAATTATTTTTATGGTGCAACAGGATCTCTTAAGTGTATGATT
TATTAAAGAAACTTAAAATCTTATTTAGTTACGTATGACATGCATATTTATAATTAATATGGTA
CATAACTTACATATGAACCTTTTAATTTGTGACTTAGTCCACTTCATATATGTCACCATCTCGC
TCTATATGGTTGCACACAAATATGTACTTTCATAGGATTTGATATTGGCTATGTTTTTAGTTTT
TGTTGTGGTAACGTACAAATATAGGTCGTATTTCATAACTCATAAGTTTACTTCTTATAAGCAA
GTAGGGAACAAGTAGGGAACACAAGCTAGAACAGAAAAGAAATTGATAAGTGGTAGATGATAGA
TAATTGTATTAGCCATGGTGTATTGGCCCAAGTCACTTAACTGGCTTTCATTTTTTGTCAGGAT
CATCGTAAGTGACTATCAATTCCATGTAACAAAGATTTTTTTTTGGATATTAAACTGGTTTAAG
TGAAAATAATACTTAATTATTGGATAACCTGAATTCATCTCCTCTTAACAATTTAACTTATAGT
ATGTACAAATTATACTTACTCAACACTGCTTGAAGCGAGTTAATTTCCGAATGGTGCTAGTGTG
ACTGTTAGTATTTTTGACTGTTAGTATTCATTTCAAAGTAATATATTCAAAAGGTATAAACTTT
TATGGATGTATAAACTTTTCCACCGATTAAGACTATTGACTATTGTAGGTTGCCAAAAGTATAG
TAACTCGAAATAAAAGAATATTACCAGAGATACAAGTATACAACAACACATCGTGTCACTAAAA
TAGTCTAAAGTATGAATTATCGTGGTGTCCTAATTAATGTGGAATGGAGCCATCTAAATTCGAA
ATTTGTTGTGAGCAACCATTCCTTTCCAGATCAAAAAGGAAAAATATATTACAATTTATTTTGC
TTGTTAGTAAGTTTCACGAGTTTTTCGTGGAGCTTTCGTCAACTTCTCTTTTTCATCATCTCAC
TCATTTGCACTTTATAGAATTGAATTTAAAATTTGATATGATACTATATATATCACTGGTATAA
ACTATTAGGCTACACATTATTGACAGAACGGATGTCAAATGAGACTGGTTTTATTACGGGAAAT
ATAATGTAATGAAAAACTGTTTCACTTATAACAGAGATTAGGGAGAACAAGTGTGTTATTGAGA
AACTCTACTTAACTCTAACTGGATTTAGACCACAAGTAAAAAATTCAAAGCTACGGCCTACATA
TCCTTTAACAAATCTCTCGTAATGCTGTTGCTAGCCGTCGAACAGATTCAAAGCATATTAACAA
AGTTATAGACGTACGTGATGCGTGGTTGTAAAGTAGACAAGTAGGACTGATGATGAAAAAAAAA
AGTAGACAAGTAGGACTCTAATTTTTAAAGTTTTTATTTGACACGATCAATTATTATGTTCACA
AAAGAATAATATTAAATAATTTAAAAAAATATTTTAAAAATACACAAGAAAGACGTATTTAATT
TTTGACATATACCTAAAATATAGGATTTTGTGTGATAGTTAACATTACGTACATGTTCAAAACA
ACCAAGAAGTGAGATTGATAAACTTGGCATTGTAAAGATTGTGAACGTGATCTCACCGTCTAAG
ACAAATTCAACTTTGTCACCCTAAAAACATGTAACATGAGATCACTACTATACCGAATCTTCTT
GAGATATTTTGATTGTTTACACGATCGCAATTATGTCCATTAACATTGTGACCATTCTAAAACC
CTAAAATTTAAAGAAAAAATAAATAAATAGCCTTTTTGACCAAAAAACCCAATCTATGGTTTTG
CCCACTATCTCTTCCTCTCTCCTCCTATATATATGTCTTATGATGAGCACACATCATCATCATT
CACATACATAAGCCAAATGGGTGTGTGGTGGATAGTGCTGGTGGTGGCTGTCTTGACTCACACG
GCGTCTGCCGCCGTGAGAGAATATCATTGGGAGGTGGAGTACAAGTATTGGTCGCCGGACTGCA
AAGAGGGCGCCGTTATGACCGTCAACGGCGAGTTTCCTGGTCCCACCATAAAAGCCTTCGCCGG
AGACACCATCGTCGTCAATCTCACCAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGCAT
GGAATCCGTCAGGTTCTCTCTCTTTTTTTTCACTATAACCAGATCATGGATCTAGAAAGCGCCG
AGTATTTTGTAAACACAACAGAAGTTATTATTAAGATGGATACACTAAGTGTCATCACTCGGAT
CATCACTTACCATATGAACTTTTTCAGATCTTCTATTTTCTTCTGCTTAATTTGTTTTCTTTTT
TCTCTATACATTAATTCAATGATTGTGTCCATTGTATAAAGAATTGTAGATTGGTATGATTTGT
CATGATATTAGATGATAAAAGAAGAAAGAAAATGGGTGAAGTTGCAGAAATAATGGGTTAAGCA
GCACATGCCATGCATGATCACTTTGTCTCTTCTTGATTCAATAACTTCATTTACGACGTTTGCT
TTTCCCATAAACACTATTTATTGTCCCTTAAAATTATCGCAACAAAATAGTACATTGACACTAC
TCTATAATTTACCTTATTTTGCATTCCTAAAGCCTAATTCAGTGTAAAGTTACTACTTAGTAGA
TGACTGAATACTTTAACTGCGTTTTGTGAATATAGTTCGGAAGTCCATGGGCAGATGGAGCAGC
AGGAGTTACTCAATGCGCAATTAACCCTGGAGAGACTTTTACCTACAATTTCACTGTTGAAAAG
GTAACTTTTTTCTTCTTCTCTTTTTCCATTATTGTAACAAAAATAAATAGTAACAAATTTGGGG
ATAAATGAAATGGTGCAGCCGGGAACACATTTCTACCATGGACACTATGGCATGCAGAGATCAG
CTGGGCTATACGGATCGTTGATTGTGGACGTGGCTAAAGGAAAGAGCGAGAGATTGAGATACGA
TGGTGAGTTTAATCTCTTACTCAGTGACTGGTGGCATGAGGCTATTCCCTCCCAAGAACTCGGT
CTTTCTTCCAAACCTATGCGCTGGATCGGTGAAGCTCAGGTTCTTTTTTTTTTACTATCTCTTT
ACTATTTTTACTTACTAAAACAATATCAATTTACTAAAAAAAATTCAAAATTTGTTTTAAAAAC
AAAAACAAAAAAGTAGGTGCATTTTTTCTTTTTTAATAGTGGAGAATGGAGATTGATTGAGATA
AAGAGCAATTTGCACAAGCAATAGTACAGCTGGCATATCAACTTCTTTTTTTTTTTGGGAAAGG
AATTTTGAACATAGGCATAATGATTTCTATATTTCTCTTTTAAAGCAATTCTAACAAGTAGCAA
ATTCTTCGAATGTGAATAGATTGGCCACTGAGTTTCTTTAAAGCGAGAAAAAAAGAATAAATTA
TTCTTTTGCTTAGAGTTTTCTAATATATGCATCATATTTGTTTTGATGAAAAATTGAAGAGCAT
ATTGATAAATGGGAGGGGACAATTCAATTGTTCATTAGCGGCGCAATTTAGCAACAACACATCA
TTACCAATGTGCACGTTTAAAGAAGGTGATCAGTGCGCCCCACAGATACTCCACGTGGAGCCGA
ACAAGACTTACCGAATCAGACTCTCCAGCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.64120621
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017