Detail information of Os03g0788300_circ_g.6


General Information
CircRNA Name Os03g0788300_circ_g.6
ID in PlantcircBase osa_circ_041603
Alias NA
Organism Oryza sativa
Position chr3: 32747923-32748779  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0788300
Parent gene annotation Conserved hypothetical protein. (Os03t0788300-01);Hypothetical c
onserved gene. (Os03t0788300-02)
Parent gene strand +
Alternative splicing Os03g0788300_circ_g.1 Os03g0788300_circ_g.2 Os03g0788300_circ_g.3 Os03g0788300_circ_g.4 Os03g0788300_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   AT-AC
Number of exons covered Os03t0788300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTTTCTGCTATTTATGTTTCTAGTGTCACCAAGCCCACAACATTGGACATCACTAATTTGG
AGGGAGGTAATGAAAGAGAAAGAACAGAAGATGTCCtcatgatgttccttcagacaacaacaat
ggtttcaaatttccacatgtaccttctggcacccttctggagagttctgtgtcacaattgccac
ttgcttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 296
Transcript exons: 32747923-32748144,32748706-32748779
TCATGATGTTCCTTCAGACAACAACAATGGTTTCAAATTTCCACATGTACCTTCTGGCACCCTT
CTGGAGAGTTCTGTGTCACAATTGCCACTTGCTTCAAATAAAGACGATAAGCTGATCAGTGCAT
CATCTTCTATATTTGGTCTCAAGCAGTCCAGTACACCAGATTCAGAACAAACAAACACTGCTGA
TGTAAAAACAGAAGCAAGACTTGGGGAGAGTGTCACCAAGCCCACAACATTGGACATCACTAAT
TTGGAGGGAGGTAATGAAAGAGAAAGAACAGAAGATGTCC

Genomic sequence TCATGATGTTCCTTCAGACAACAACAATGGTTTCAAATTTCCACATGTACCTTCTGGCACCCTT
CTGGAGAGTTCTGTGTCACAATTGCCACTTGCTTCAAATAAAGACGATAAGCTGATCAGTGCAT
CATCTTCTATATTTGGTCTCAAGCAGTCCAGTACACCAGATTCAGAACAAACAAACACTGCTGA
TGTAAAAACAGAAGCAAGACTTGGGGAGAGGTGATTTTCTTGGCACTCCCTATTTCCCTTTTTC
TCCTTATTAATTGTTTGCACTGGTCATCTTCTGGAAGGAGGAAGAGTAAAAACTATAAAACAAA
GACAACCCAGTATTTGCAAATTCGTTTTTCTTCAAGTGCTTGCAAATTCATTTGTTACTAACAC
ATAACCTACTAAAAAGAATGTTCATTCTAGCTATTGACTTGAGAAGTCCCTTATGGTTTTTTTT
CTCACAATGACATGACATGTATGTAAAGGCTGAAGATCCTGTACAGTACTCTTGTTTAACTCGG
TCATAATTTGTATATACATGTTAAGAGATGGTACATTTTATTCCAAGGGTTATTTTAGTAGGAT
GGATCGTAAATATGTAATTGAAATGCATGTACAGCCTATCAGGATATTCCTTTTTTTTTTCAAT
CTTTGATTACTTATTTGCTGTTTGGAGGAATTTTTTGGAAAATAACATAACAGGGCTTTAAAAT
AGGATATCCCTTTTGTAGTGTAGAATTGCTTTCTATCTATGGAGTAACCGCTTATGTTTTCTGC
TATTTATGTTTCTAGTGTCACCAAGCCCACAACATTGGACATCACTAATTTGGAGGGAGGTAAT
GAAAGAGAAAGAACAGAAGATGTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.147582293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study