Detail information of Os03g0788300_circ_g.4


General Information
CircRNA Name Os03g0788300_circ_g.4
ID in PlantcircBase osa_circ_022198
Alias Os_ciR8904
Organism Oryza sativa
Position chr3: 32747328-32747770  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0788300
Parent gene annotation Conserved hypothetical protein. (Os03t0788300-01);Hypothetical c
onserved gene. (Os03t0788300-02)
Parent gene strand +
Alternative splicing Os03g0788300_circ_g.1 Os03g0788300_circ_g.2 Os03g0788300_circ_g.3 Os03g0788300_circ_g.5 Os03g0788300_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0788300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGATGACCAGGAGGCTCCTATCCCATCGAAAAATTCAATGGGCAAGACTGAGGTGAAGACA
ACTGATAAAAAAATTGATCTGAAGAAGGAGCAGAAAtgaccctagtagttcccagaaatttcaa
cctatggatagtgttaagcattcccttgatccagaactgaatggttcaccatcgagtaaagaca
agctgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGACCCTAGTAGTTCCCAGAAATTTCAACCTATGGATAGTGTTAAGCATTCCCTTGATCCAGAA
CTGAATGGTTCACCATCGAGTAAAGACAAGCTGAGAAAAGATGGATCATCAAAACTTCTGTCAC
ATTCATTTAAGGATTTAGGCAACAAAGACATTAGGTCTGATAATGTTGCTCTATCTTCAGTTGC
CGCTACTACATCAAGCAAACCGGGCTTTAAAATGGCTGTTTTTGAGGTATGGGGAAAGTTTACT
CTTGGTTCCTCGAATTATATTAAACGCTCACTCATGTCCTGAGATTATTCTTTATCACCTTTTT
TTGTTGCAGGATCTACCAGAGTTTGATGATGACCAGGAGGCTCCTATCCCATCGAAAAATTCAA
TGGGCAAGACTGAGGTGAAGACAACTGATAAAAAAATTGATCTGAAGAAGGAGCAGAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.123212961
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015