Detail information of BGIOSGA033502_circ_g.1


General Information
CircRNA Name BGIOSGA033502_circ_g.1
ID in PlantcircBase osi_circ_008752
Alias Chr10:25411037_25411491(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 22116785-22117239  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033502
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033502_circ_ag.1 BGIOSGA033503_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033502-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATCCGTTTACCTTTCCGCCTTATCACAAAGCTGTCAGGGAACCATTTGACTATTACATGTT
TGGTCAGAACTACATTAGGCCCCTTGTAGACTATAGgagctcattttgcatatcagaaaggaag
tggagaaagggaagctgcctgcagatgtcgctgccaatctagaagagctatactacaactacaa
ggatgcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCTCATTTTGCATATCAGAAAGGAAGTGGAGAAAGGGAAGCTGCCTGCAGATGTCGCTGCCA
ATCTAGAAGAGCTATACTACAACTACAAGGATGCGGTAACATTTCTTCTTTTCTATCTGCTGCA
ATTGCAATTAGATCATCGGCTCATATGGCCACGGGGATACTCTGCCTTATCAGGTTATGCAGAG
CAGGGATCCAAATGCACACGACATCGTGCTTTCAAACATGGTGGCCCTGTTCGATTGTGTTCTG
CTCGATGTAGAGGTTCTACCTCCTGTCATTATCTTCCTGATTTCCTCTGACATTTTTCTTTTAT
GCCCCCTTTTATACCAAGCTGCCTCCTCCTTTTGCAGAATCCGTTTACCTTTCCGCCTTATCAC
AAAGCTGTCAGGGAACCATTTGACTATTACATGTTTGGTCAGAACTACATTAGGCCCCTTGTAG
ACTATAG
Conservation Information
Conserved circRNAs osa_circ_008183
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021