Detail information of Os10g0577900_circ_g.2


General Information
CircRNA Name Os10g0577900_circ_g.2
ID in PlantcircBase osa_circ_008183
Alias Os10circ10937/Os_ciR6926
Organism Oryza sativa
Position chr10: 23045311-23045764  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os10g0577900
Parent gene annotation Similar to Glycerol-3-phosphate acyltransferase (Fragment). (Os1
0t0577900-01)
Parent gene strand +
Alternative splicing NA
Support reads 2/2/2
Tissues leaf/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0577900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATCCGTTTACCTTTCCGCCTTATCACAAAGCTGTCAGGGAACCATTCGACTATTACATGTT
TGGTCAGAACTACATTAGGCCCCTTGTAGACTATAGagctcattttgcatatcagaaaggaagt
ggagaaagggaagctgcctgcagatgtcgctgccaatctagaagagctatactacaactacaag
gacgcggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 283
Transcript exons: 23045311-23045408,23045491-23045577,23045667-23045764
AGCTCATTTTGCATATCAGAAAGGAAGTGGAGAAAGGGAAGCTGCCTGCAGATGTCGCTGCCAA
TCTAGAAGAGCTATACTACAACTACAAGGACGCGGTTATGCAGAGCAGGGATCCAAATGCACAC
GACATCGTGCTTTCAAACATGGTGGCCCTGTTCGATTGTGTTCTGCTCGATGTAGAGAATCCGT
TTACCTTTCCGCCTTATCACAAAGCTGTCAGGGAACCATTCGACTATTACATGTTTGGTCAGAA
CTACATTAGGCCCCTTGTAGACTATAG

Genomic sequence AGCTCATTTTGCATATCAGAAAGGAAGTGGAGAAAGGGAAGCTGCCTGCAGATGTCGCTGCCAA
TCTAGAAGAGCTATACTACAACTACAAGGACGCGGTAACATTTCTTCTTTTCTATCTGCTGCAA
TTGCAATTAGATCATCGGCTCATATGGCCACGGGGATACTCTGCCTTATCAGGTTATGCAGAGC
AGGGATCCAAATGCACACGACATCGTGCTTTCAAACATGGTGGCCCTGTTCGATTGTGTTCTGC
TCGATGTAGAGGTTCTACCTCCTGTCATTATCTTCCTGATTTCCTCTGACATTTTTCTTTTATG
CCCCCTTTTATACCAAGCTGCCTCCTCCTTTTGCAGAATCCGTTTACCTTTCCGCCTTATCACA
AAGCTGTCAGGGAACCATTCGACTATTACATGTTTGGTCAGAACTACATTAGGCCCCTTGTAGA
CTATAG
Conservation Information
Conserved circRNAs osi_circ_008752
PMCS 0.249993612
Functional Information
Coding potential Y
Potential coding position 23045495-23045743(+)
23045319-23045535(-)
Potential amino acid sequence MQSRDPNAHDIVLSNMVALFDCVLLDVENPFTFPPYHKAVREPFDYYMFGQNYIRPLVDYRAHF
AYQKGSGEREAACRCRCQSRRAILQLQGRGYAEQGSKCTRHRAFKHGGPVRLCSARCRESVYLS
ALSQSCQGTIRLLHVWSELH*(+)
MSSIVYKGPNVVLTKHVIVEWFPDSFVIRRKGKRILYIEQNTIEQGHHV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA