Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0246200_circ_g.1 |
ID in PlantcircBase | osa_circ_033282 |
Alias | Os_ciR4097 |
Organism | Oryza sativa |
Position | chr7: 8138195-8138913 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os07g0246200 |
Parent gene annotation |
Similar to Calreticulin (Fragment). (Os07t0246200-01);Similar to Calreticulin (Fragment). (Os07t0246200-02);Similar to calreticu lin2. (Os07t0246200-03) |
Parent gene strand | + |
Alternative splicing | Os07g0246200_circ_g.2 Os07g0246200_circ_g.3 Os07g0246200_circ_g.4 Os07g0246200_circ_g.5 Os07g0246200_circ_g.6 Os07g0246200_circ_g.7 Os07g0246200_circ_g.8 Os07g0246200_circ_g.9 Os07g0246200_circ_g.10 Os07g0246200_circ_g.11 Os07g0246200_circ_g.12 Os07g0246200_circ_g.13 Os07g0246200_circ_g.14 Os07g0246200_circ_g.15 Os07g0246200_circ_g.16 Os07g0246200_circ_g.17 Os07g0246200_circ_g.18 Os07g0246200_circ_g.19 Os07g0246200_circ_g.20 Os07g0246200_circ_g.21 Os07g0246200_circ_g.22 Os07g0246200_circ_g.23 |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os07t0246200-02:3 Os07t0246200-03:3 Os07t0246200-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017677 |
PMCS | 0.650029068 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8138805-8138237(+) 8138246-8138472(+) |
Potential amino acid sequence |
MLHTPYLLTMLRSNLAASTSTGIFCLRSKSRTQKLRRWMGKSVGQVRMEEG*(+) MAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGY VKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYT LIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKMDGKVGGSSQNGRRMRTWLVNG TTHLGSGMEILRTKVSKPLRTTGSTLFQRSTQNSATRIKPWCCSSL*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |