Detail information of Os07g0246200_circ_g.1


General Information
CircRNA Name Os07g0246200_circ_g.1
ID in PlantcircBase osa_circ_033282
Alias Os_ciR4097
Organism Oryza sativa
Position chr7: 8138195-8138913  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os07g0246200
Parent gene annotation Similar to Calreticulin (Fragment). (Os07t0246200-01);Similar to
Calreticulin (Fragment). (Os07t0246200-02);Similar to calreticu
lin2. (Os07t0246200-03)
Parent gene strand +
Alternative splicing Os07g0246200_circ_g.2 Os07g0246200_circ_g.3 Os07g0246200_circ_g.4 Os07g0246200_circ_g.5 Os07g0246200_circ_g.6 Os07g0246200_circ_g.7 Os07g0246200_circ_g.8 Os07g0246200_circ_g.9 Os07g0246200_circ_g.10 Os07g0246200_circ_g.11 Os07g0246200_circ_g.12 Os07g0246200_circ_g.13 Os07g0246200_circ_g.14 Os07g0246200_circ_g.15 Os07g0246200_circ_g.16 Os07g0246200_circ_g.17 Os07g0246200_circ_g.18 Os07g0246200_circ_g.19 Os07g0246200_circ_g.20 Os07g0246200_circ_g.21 Os07g0246200_circ_g.22 Os07g0246200_circ_g.23
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0246200-02:3
Os07t0246200-03:3
Os07t0246200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCATACTTATTGACAATGTTGAGAAGCAATCTGGCAGCATCTACGAGCACTGGGATATTCTG
CCTCCGAAGCAAATCAAGGACCCAGAAGCTAAGAAGatggatgggaaagtcggtgggtcaagtc
agaatggaagaaggatgagaacatggctggtgaatggaaccacacatctgggaagtggaatgga
gatcctga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 560
Transcript exons: 8138195-8138302,8138377-8138569,8138655-8138913
ATGGATGGGAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATG
GAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGGTATCCAAACCTCTGAGGAC
TACAGGTTCTACGCTATTTCAGCGGAGTACCCAGAATTCAGCAACAAGGATAAAACCCTGGTGC
TGCAGTTCTCTGTAAAGCATGAGCAAAAGCTTGACTGTGGTGGTGGATATGTCAAGTTGCTTGG
TGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGCATTATGTTTGGACCAGAC
ATCTGTGGGTACAGCACCAAGAAGGTCCATACTATCTTTACTAAGAATGACAAGAACCATTTGA
TCAAGAAGGATGTCCCCTGCGAGACTGATCAGCTGTCCCATGTGTACACTTTGATCATCCATCC
TGATGCTACATACACCATACTTATTGACAATGTTGAGAAGCAATCTGGCAGCATCTACGAGCAC
TGGGATATTCTGCCTCCGAAGCAAATCAAGGACCCAGAAGCTAAGAAG

Genomic sequence ATGGATGGGAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATG
GAACCACACATCTGGGAAGTGGAATGGAGATCCTGAGGACAAAGGTAAATTGGAAGATCAATAC
ACCTCATTCAGACACTAACAGATGATTTTTACTGAATTATTTTTCTTGTTGCAGGTATCCAAAC
CTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCCAGAATTCAGCAACAAGGATAAA
ACCCTGGTGCTGCAGTTCTCTGTAAAGCATGAGCAAAAGCTTGACTGTGGTGGTGGATATGTCA
AGTTGCTTGGTGGTGATGTTGACCAGAAGAAATTTGGTGGGGACACACCGTACAGGTAATGATT
TTCTTCTATTGTAGCTCTGATTCTCACTTTTCTCAAGATTAGTACTAGTTATCTAACTTGGTAC
TTTTGAATGCAGCATTATGTTTGGACCAGACATCTGTGGGTACAGCACCAAGAAGGTCCATACT
ATCTTTACTAAGAATGACAAGAACCATTTGATCAAGAAGGATGTCCCCTGCGAGACTGATCAGC
TGTCCCATGTGTACACTTTGATCATCCATCCTGATGCTACATACACCATACTTATTGACAATGT
TGAGAAGCAATCTGGCAGCATCTACGAGCACTGGGATATTCTGCCTCCGAAGCAAATCAAGGAC
CCAGAAGCTAAGAAG
Conservation Information
Conserved circRNAs osi_circ_017677
PMCS 0.650029068
Functional Information
Coding potential Y
Potential coding position 8138805-8138237(+)
8138246-8138472(+)
Potential amino acid sequence MLHTPYLLTMLRSNLAASTSTGIFCLRSKSRTQKLRRWMGKSVGQVRMEEG*(+)
MAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGY
VKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYT
LIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKMDGKVGGSSQNGRRMRTWLVNG
TTHLGSGMEILRTKVSKPLRTTGSTLFQRSTQNSATRIKPWCCSSL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017