Detail information of BGIOSGA001870_circ_igg.2


General Information
CircRNA Name BGIOSGA001870_circ_igg.2
ID in PlantcircBase osi_circ_001988
Alias 1:11246395|11252545
Organism Oryza sativa ssp. indica
Position chr1: 11246395-11252545  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001870_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGAATGGACAAGCAGATAAGAAAGACGCAACGCAACGCAGCGGTTGCAGCCGCAGCCCCAAGC
CCCGGGTTCCCTTCACCGCCCTCGCGTCAATCCACGgttcagaccttattatttcatgaagtgt
gcttatcataatgacatagccatattatgtgtcagctcatctgatcattgttgcaatatgaagg
gtggctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_001377*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021