Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17690_circ_g.6 |
ID in PlantcircBase | ath_circ_003132 |
Alias | At_ciR4316, Ath_circ_FC0414, Ath_circ_FC0415 |
Organism | Arabidpsis thaliana |
Position | chr1: 6084261-6086319 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G17690 |
Parent gene annotation |
Putative uncharacterized protein At1g17690 |
Parent gene strand | - |
Alternative splicing | AT1G17690_circ_g.1 AT1G17690_circ_g.2 AT1G17690_circ_g.3 AT1G17690_circ_g.4 AT1G17690_circ_g.5 AT1G17690_circ_g.7 AT1G17690_circ_g.8 AT1G17690_circ_g.9 AT1G17690_circ_g.10 AT1G17690_circ_g.11 AT1G17690_circ_g.12 AT1G17690_circ_g.13 AT1G17690_circ_g.14 AT1G17690_circ_g.15 |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G17690.1:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.132300017 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6085625-6084263(-) |
Potential amino acid sequence |
MLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISM QNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLN YKGKMKMACEYKGVLEKVLLPVRQLNHIFKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGF TRPKVLILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGN SIKQKSSKPSDWQALFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEE NKERDVDYLSSIEVLVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARF YRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQLNHIFKTRDLVKKNE SKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSIAFRVVKRLIQLTPESQRVNVEHLDR FNDEFGCEEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQALFGANNNDDEFMLGIKHTRKSIRLY GDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEVLVIDHADIISMQNWSFLATVVDYLN RLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPEMNSLFGRHCLNYKGKMKMACEYKGV LEKVLLPVRQLNHIFKTRDLVKKNESKIAKHRETSEEEILSDDGFLDQGFTRPKVLILLPLRSI AFRVVKRLIQLTPESQRVNVEHLDRFNDEFGCEEDTDDCDGEKTTSKNGNSIKQKSSKPSDWQA LFGANNNDDEFMLGIKHTRKSIRLYGDFYSSDIIVASPLKLHMAIGAAEENKERDVDYLSSIEV LVIDHADIISMQNWSFLATVVDYLNRLPTKQHGTNVMRIRPLYLDGHARFYRQSIILSSYLTPE MNSLFGRHCLNYKGKMKMACEYKGVLEKVLLPVRQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |